diff gemini_interactions.xml @ 17:65f742e605ec draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gemini commit 344140b8df53b8b7024618bb04594607a045c03a

--- a/gemini_interactions.xml	Tue Apr 28 22:55:56 2015 -0400
+++ b/gemini_interactions.xml	Mon May 04 22:46:38 2015 -0400
@@ -1,14 +1,15 @@
 <tool id="gemini_@BINARY@" name="GEMINI @BINARY@" version="@VERSION@.0">
     <description>Find genes among variants that are interacting partners</description>
-    <expand macro="requirements" />
-    <expand macro="version_command" />
     <macros>
         <import>gemini_macros.xml</import>
         <token name="@BINARY@">interactions</token>
     </macros>
+    <expand macro="requirements" />
+    <expand macro="stdio" />
+    <expand macro="version_command" />
     <command>
 <![CDATA[
-        gemini 
+        gemini
             --annotation-dir ${annotation_databases.fields.path}
             #if $gene.gene_selector == 'lof':
                 ## lof interactions is a separate program
@@ -25,7 +26,6 @@
             > "${ outfile }"
 ]]>
     </command>
-    <expand macro="stdio" />
     <inputs>
         <expand macro="infile" />