diff gemini_autosomal_recessive.xml @ 17:65f742e605ec draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gemini commit 344140b8df53b8b7024618bb04594607a045c03a

--- a/gemini_autosomal_recessive.xml	Tue Apr 28 22:55:56 2015 -0400
+++ b/gemini_autosomal_recessive.xml	Mon May 04 22:46:38 2015 -0400
@@ -1,13 +1,14 @@
 <tool id="gemini_recessive_and_dominant" name="GEMINI autosomal recessive/dominant" version="@VERSION@.0">
     <description>Find variants meeting an autosomal recessive/dominant model</description>
-    <expand macro="requirements" />
-    <expand macro="version_command" />
     <macros>
         <import>gemini_macros.xml</import>
     </macros>
+    <expand macro="requirements" />
+    <expand macro="stdio" />
+    <expand macro="version_command" />
     <command>
 <![CDATA[
-        gemini 
+        gemini
 
             #if str($rec_or_dom) == 'recessive':
                 ## start autosomal_recessive
@@ -32,7 +33,6 @@
             > "${ outfile }"
 ]]>
     </command>
-    <expand macro="stdio" />
     <inputs>
 
         <param name="rec_or_dom" type="select" label="Autosomal ..." help="">
@@ -58,8 +58,8 @@
     <help>
 **What it does**
 
-Assuming you have defined the familial relationships between samples when loading your VCF into GEMINI, one can leverage a 
-built-in tool for identifying variants that meet an autosomal recessive or dominant inheritance pattern. 
+Assuming you have defined the familial relationships between samples when loading your VCF into GEMINI, one can leverage a
+built-in tool for identifying variants that meet an autosomal recessive or dominant inheritance pattern.
 The reported variants will be restricted to those variants having the potential to impact the function of affecting protein coding transcripts.
 
 @CITATION@