comparison gemini_annotate.xml @ 11:53a5647e5271 draft

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10:0f1bcedd836f

]]>

    </command>
    <expand macro="stdio" />
    <inputs>
        <param name="infile" type="data" format="sqlite" label="GEMINI database" />
        <param name="annotate_source" type="data" format="bed" label="File containing the annotations in BED format" help="(-f)"/>

        <param name="column_name" size="20" type="text" value=""
            label="The name of the column to be added to the variant table" help="(-c)">
            <sanitizer invalid_char=" ">

            <when value="count"/>
        </conditional>

    </inputs>
    <outputs>
        <data name="outfile" format="tabular" label="${tool.name} on ${on_string}" />
    </outputs>
    <tests>
        <test>
        </test>
    </tests>

11:53a5647e5271

]]>

    </command>
    <expand macro="stdio" />
    <inputs>
        <expand macro="infile" />
        <param name="annotate_source" type="data" format="bed" label="File containing the annotations in BED format" help="(-f)"/>

        <param name="column_name" size="20" type="text" value=""
            label="The name of the column to be added to the variant table" help="(-c)">
            <sanitizer invalid_char=" ">

            <when value="count"/>
        </conditional>

    </inputs>
    <outputs>
        <data name="outfile" format="tabular" />
    </outputs>
    <tests>
        <test>
        </test>
    </tests>