Mercurial > repos > iuc > funannotate_predict

diff funannotate_predict.xml @ 6:2977b1d79718 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/funannotate commit 8307455ce2bb36981fee509f556ff17c227a9d8a
author iuc
date Sun, 22 Jan 2023 17:27:25 +0000
parents f39a499e48bd
children c8b01160610c
line wrap: on
line diff
--- a/funannotate_predict.xml	Thu Nov 25 16:18:06 2021 +0000
+++ b/funannotate_predict.xml	Sun Jan 22 17:27:25 2023 +0000
@@ -22,8 +22,11 @@
     sed -i.bak 's|/tmp/prout|'`pwd`'/hacked_database|' './hacked_database/trained_species/fly/info.json' &&
 #end if
 
+mkdir -p input/ &&
+ln -s '${input}' input/input.fasta &&
+
 funannotate predict
---input '${input}'
+--input input/input.fasta
 --out output
 #if $uglyTestingHack == "true":
     --database `pwd`'/hacked_database'