annotate README.md @ 1:97bf4fc64c10 draft

"planemo upload commit 87560553f1dbbd3e0ab7d7157fa5a7f32f61dca1"
author iuc
date Mon, 04 Oct 2021 19:32:24 +0000
parents ec3b462fc579
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
ec3b462fc579 "planemo upload commit 9613152729099079c7465c3d5d42005ef22ca91e"
iuc
parents:
diff changeset
1 # Funannotate
ec3b462fc579 "planemo upload commit 9613152729099079c7465c3d5d42005ef22ca91e"
iuc
parents:
diff changeset
2
ec3b462fc579 "planemo upload commit 9613152729099079c7465c3d5d42005ef22ca91e"
iuc
parents:
diff changeset
3 Funannotate can use GeneMark to predict gene, but due to licensing issues, we are not allowed to distribute GeneMark automatically.
ec3b462fc579 "planemo upload commit 9613152729099079c7465c3d5d42005ef22ca91e"
iuc
parents:
diff changeset
4
ec3b462fc579 "planemo upload commit 9613152729099079c7465c3d5d42005ef22ca91e"
iuc
parents:
diff changeset
5 If you want to use it, the Galaxy administrator needs to install it GeneMark following the instructions on https://github.com/nextgenusfs/funannotate, and set the `GENEMARK_PATH` variable on the job destination.