# HG changeset patch
# User iuc
# Date 1567726613 14400
# Node ID dfa29fefb36a28bd9f71aa78338fc93a2791de75
# Parent  944deba3eb6a6dee2959a5328ffcbbaa0dbfb34f
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/featurecounts commit e2a10eeee8765ba6cf03847562e56cdaeaf4ba5c"

diff -r 944deba3eb6a -r dfa29fefb36a featurecounts.xml
--- a/featurecounts.xml	Thu Jun 06 17:53:42 2019 -0400
+++ b/featurecounts.xml	Thu Sep 05 19:36:53 2019 -0400
@@ -113,7 +113,7 @@
         #end if
 
         #if $extended_parameters.R:
-            && samtools sort -o '$output_bam' -@ \${GALAXY_SLOTS:-2} *.featureCounts.bam
+            && samtools sort -o '$output_bam' -@ \${GALAXY_SLOTS:-2} -T "\${TMPDIR:-.}" *.featureCounts.bam
         #end if
         && sed -e 's|${alignment}|${alignment.element_identifier}|g' 'output.summary' > '${output_summary}'
     ]]></command>