# HG changeset patch
# User iuc
# Date 1605954101 0
# Node ID 55cdfc5bb8260aa718e56265232148becb815eee
# Parent  48a5ee6c175c37ab5eb971ee6e51021c6fc0c465
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/featurecounts commit 34edb37978466203f104fbd6eb394ad9e560f859"

diff -r 48a5ee6c175c -r 55cdfc5bb826 featurecounts.xml
--- a/featurecounts.xml	Fri Aug 14 08:28:31 2020 +0000
+++ b/featurecounts.xml	Sat Nov 21 10:21:41 2020 +0000
@@ -1,8 +1,8 @@
-<tool id="featurecounts" name="featureCounts" version="1.6.4+galaxy2" profile="16.04">
+<tool id="featurecounts" name="featureCounts" version="2.0.1" profile="16.04">
     <description>Measure gene expression in RNA-Seq experiments from SAM or BAM files.</description>
     <requirements>
-        <requirement type="package" version="1.6.4">subread</requirement>
-        <requirement type="package" version="1.9">samtools</requirement>
+        <requirement type="package" version="2.0.1">subread</requirement>
+        <requirement type="package" version="1.11">samtools</requirement>
         <requirement type="package" version="8.31">coreutils</requirement>
     </requirements>
 
diff -r 48a5ee6c175c -r 55cdfc5bb826 test-data/output.bam
Binary file test-data/output.bam has changed
diff -r 48a5ee6c175c -r 55cdfc5bb826 test-data/output_1_summary.tab
--- a/test-data/output_1_summary.tab	Fri Aug 14 08:28:31 2020 +0000
+++ b/test-data/output_1_summary.tab	Sat Nov 21 10:21:41 2020 +0000
@@ -1,6 +1,8 @@
 Status	featureCounts_input1.bam
 Assigned	158
 Unassigned_Unmapped	0
+Unassigned_Read_Type	0
+Unassigned_Singleton	0
 Unassigned_MappingQuality	0
 Unassigned_Chimera	0
 Unassigned_FragmentLength	0
diff -r 48a5ee6c175c -r 55cdfc5bb826 test-data/output_summary_builtin_hg19.tab
--- a/test-data/output_summary_builtin_hg19.tab	Fri Aug 14 08:28:31 2020 +0000
+++ b/test-data/output_summary_builtin_hg19.tab	Sat Nov 21 10:21:41 2020 +0000
@@ -1,6 +1,8 @@
 Status	pairend_strandspecific_51mer_hg19_chr1_1-100000.bam
 Assigned	3
 Unassigned_Unmapped	0
+Unassigned_Read_Type	0
+Unassigned_Singleton	0
 Unassigned_MappingQuality	0
 Unassigned_Chimera	0
 Unassigned_FragmentLength	0
diff -r 48a5ee6c175c -r 55cdfc5bb826 test-data/subset.sorted.featurecounts.bam
Binary file test-data/subset.sorted.featurecounts.bam has changed