Mercurial > repos > iuc > fastp
comparison macros.xml @ 14:9047af1bc797 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastp commit 17a0a67dfbc7541a7fe3618cfbbb71d814042889
| author | iuc |
|---|---|
| date | Fri, 15 Nov 2024 15:31:38 +0000 |
| parents | 2d605e86b5d7 |
| children | 515315f1a8a0 |
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| 13:2d605e86b5d7 | 14:9047af1bc797 |
|---|---|
| 59 <xml name="detect_adapter_for_pe"> | 59 <xml name="detect_adapter_for_pe"> |
| 60 <param argument="--detect_adapter_for_pe" type="boolean" truevalue="--detect_adapter_for_pe" falsevalue="" checked="false" label="Adapter sequence auto-detection for paired-end" /> | 60 <param argument="--detect_adapter_for_pe" type="boolean" truevalue="--detect_adapter_for_pe" falsevalue="" checked="false" label="Adapter sequence auto-detection for paired-end" /> |
| 61 </xml> | 61 </xml> |
| 62 | 62 |
| 63 <xml name="in" token_read_number="1" token_argument="-i"> | 63 <xml name="in" token_read_number="1" token_argument="-i"> |
| 64 <param name="in@READ_NUMBER@" argument="@ARGUMENT@" type="data" format="fastqsanger,fastqsanger.gz,fastqillumina,fastqillumina.gz" label="Input @READ_NUMBER@" help="Input FASTQ file #@READ_NUMBER@"/> | 64 <param name="in@READ_NUMBER@" argument="@ARGUMENT@" type="data" format="fastqsanger,fastqsanger.gz" label="Input @READ_NUMBER@" help="Input FASTQ file #@READ_NUMBER@"/> |
| 65 </xml> | 65 </xml> |
| 66 | 66 |
| 67 <xml name="poly_g_min_len"> | 67 <xml name="poly_g_min_len"> |
| 68 <param argument="--poly_g_min_len" type="integer" optional="true" label="PolyG minimum length" | 68 <param argument="--poly_g_min_len" type="integer" optional="true" label="PolyG minimum length" |
| 69 help="The minimum length to detect polyG in the read tail. 10 by default."/> | 69 help="The minimum length to detect polyG in the read tail. 10 by default."/> |
| 70 </xml> | 70 </xml> |
| 71 | |
| 72 <xml name="format_actions" token_read_number="1" token_forward_reverse="forward"> | |
| 73 <actions> | |
| 74 <conditional name="single_paired.single_paired_selector"> | |
| 75 <when value="paired"> | |
| 76 <action type="format"> | |
| 77 <option type="from_param" name="single_paired.in@READ_NUMBER@" param_attribute="ext" /> | |
| 78 </action> | |
| 79 </when> | |
| 80 <when value="paired_collection"> | |
| 81 <action type="format"> | |
| 82 <option type="from_param" name="single_paired.paired_input" param_attribute="@FORWARD_REVERSE@.ext" /> | |
| 83 </action> | |
| 84 </when> | |
| 85 </conditional> | |
| 86 </actions> | |
| 87 </xml> | |
| 71 </macros> | 88 </macros> |