Mercurial > repos > iuc > exonerate

annotate test-data/est2genome.gff @ 4:37f3a8c3c694 draft default tip

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/exonerate commit e0d4688a59e6eeba33adcfe803ac43d0bc2863e7"
author iuc
date Tue, 31 Aug 2021 08:06:32 +0000
parents 0d6a5769f901
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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b1fd74cb7cb9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/exonerate commit e02d20338ee01ed58265d93e9cc5b0695a322d47
iuc
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1 # --- START OF GFF DUMP ---
b1fd74cb7cb9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/exonerate commit e02d20338ee01ed58265d93e9cc5b0695a322d47
iuc
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2 #
b1fd74cb7cb9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/exonerate commit e02d20338ee01ed58265d93e9cc5b0695a322d47
iuc
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3 #
b1fd74cb7cb9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/exonerate commit e02d20338ee01ed58265d93e9cc5b0695a322d47
iuc
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4 ##gff-version 2
b1fd74cb7cb9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/exonerate commit e02d20338ee01ed58265d93e9cc5b0695a322d47
iuc
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5 ##source-version exonerate:est2genome 2.4.0
3
0d6a5769f901 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/exonerate commit a141c63903d1a598569985e400125d4e7de42801"
iuc
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6 ##date 2020-02-26
0
b1fd74cb7cb9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/exonerate commit e02d20338ee01ed58265d93e9cc5b0695a322d47
iuc
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7 ##type DNA
b1fd74cb7cb9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/exonerate commit e02d20338ee01ed58265d93e9cc5b0695a322d47
iuc
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8 #
b1fd74cb7cb9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/exonerate commit e02d20338ee01ed58265d93e9cc5b0695a322d47
iuc
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9 #
b1fd74cb7cb9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/exonerate commit e02d20338ee01ed58265d93e9cc5b0695a322d47
iuc
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10 # seqname source feature start end score strand frame attributes
b1fd74cb7cb9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/exonerate commit e02d20338ee01ed58265d93e9cc5b0695a322d47
iuc
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11 #
b1fd74cb7cb9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/exonerate commit e02d20338ee01ed58265d93e9cc5b0695a322d47
iuc
parents:
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12 sample exonerate:est2genome gene 2742 2819 102 - . gene_id 1 ; sequence sample ; gene_orientation . ; identity 58.97 ; similarity 58.97
b1fd74cb7cb9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/exonerate commit e02d20338ee01ed58265d93e9cc5b0695a322d47
iuc
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13 sample exonerate:est2genome exon 2742 2819 . - . insertions 0 ; deletions 0 ; identity 58.97 ; similarity 58.97
b1fd74cb7cb9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/exonerate commit e02d20338ee01ed58265d93e9cc5b0695a322d47
iuc
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14 sample exonerate:est2genome similarity 2742 2819 102 - . alignment_id 1 ; Query sample ; Align 2820 1168 78
b1fd74cb7cb9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/exonerate commit e02d20338ee01ed58265d93e9cc5b0695a322d47
iuc
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15 # --- END OF GFF DUMP ---
b1fd74cb7cb9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/exonerate commit e02d20338ee01ed58265d93e9cc5b0695a322d47
iuc
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16 #
b1fd74cb7cb9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/exonerate commit e02d20338ee01ed58265d93e9cc5b0695a322d47
iuc
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17 # --- START OF GFF DUMP ---
b1fd74cb7cb9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/exonerate commit e02d20338ee01ed58265d93e9cc5b0695a322d47
iuc
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18 #
b1fd74cb7cb9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/exonerate commit e02d20338ee01ed58265d93e9cc5b0695a322d47
iuc
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19 #
b1fd74cb7cb9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/exonerate commit e02d20338ee01ed58265d93e9cc5b0695a322d47
iuc
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20 ##gff-version 2
b1fd74cb7cb9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/exonerate commit e02d20338ee01ed58265d93e9cc5b0695a322d47
iuc
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21 ##source-version exonerate:est2genome 2.4.0
3
0d6a5769f901 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/exonerate commit a141c63903d1a598569985e400125d4e7de42801"
iuc
parents: 0
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22 ##date 2020-02-26
0
b1fd74cb7cb9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/exonerate commit e02d20338ee01ed58265d93e9cc5b0695a322d47
iuc
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23 ##type DNA
b1fd74cb7cb9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/exonerate commit e02d20338ee01ed58265d93e9cc5b0695a322d47
iuc
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24 #
b1fd74cb7cb9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/exonerate commit e02d20338ee01ed58265d93e9cc5b0695a322d47
iuc
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25 #
b1fd74cb7cb9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/exonerate commit e02d20338ee01ed58265d93e9cc5b0695a322d47
iuc
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26 # seqname source feature start end score strand frame attributes
b1fd74cb7cb9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/exonerate commit e02d20338ee01ed58265d93e9cc5b0695a322d47
iuc
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27 #
b1fd74cb7cb9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/exonerate commit e02d20338ee01ed58265d93e9cc5b0695a322d47
iuc
parents:
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28 sample exonerate:est2genome gene 758 3050 7309 + . gene_id 1 ; sequence sample ; gene_orientation + ; identity 99.93 ; similarity 99.93
b1fd74cb7cb9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/exonerate commit e02d20338ee01ed58265d93e9cc5b0695a322d47
iuc
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29 sample exonerate:est2genome utr5 758 1332 . + .
b1fd74cb7cb9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/exonerate commit e02d20338ee01ed58265d93e9cc5b0695a322d47
iuc
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30 sample exonerate:est2genome exon 758 1332 . + . insertions 0 ; deletions 2 ; identity 99.83 ; similarity 99.83
b1fd74cb7cb9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/exonerate commit e02d20338ee01ed58265d93e9cc5b0695a322d47
iuc
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31 sample exonerate:est2genome splice5 1333 1334 . + . intron_id 1 ; splice_site "TT"
b1fd74cb7cb9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/exonerate commit e02d20338ee01ed58265d93e9cc5b0695a322d47
iuc
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32 sample exonerate:est2genome intron 1333 2151 . + . intron_id 1
b1fd74cb7cb9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/exonerate commit e02d20338ee01ed58265d93e9cc5b0695a322d47
iuc
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33 sample exonerate:est2genome splice3 2150 2151 . + . intron_id 0 ; splice_site "AT"
b1fd74cb7cb9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/exonerate commit e02d20338ee01ed58265d93e9cc5b0695a322d47
iuc
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34 sample exonerate:est2genome exon 2152 3050 . + . insertions 0 ; deletions 0 ; identity 100.00 ; similarity 100.00
b1fd74cb7cb9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/exonerate commit e02d20338ee01ed58265d93e9cc5b0695a322d47
iuc
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35 sample exonerate:est2genome similarity 758 3050 7309 + . alignment_id 1 ; Query sample ; Align 758 1 572 ; Align 1330 575 3 ; Align 2152 578 899
b1fd74cb7cb9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/exonerate commit e02d20338ee01ed58265d93e9cc5b0695a322d47
iuc
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36 # --- END OF GFF DUMP ---
b1fd74cb7cb9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/exonerate commit e02d20338ee01ed58265d93e9cc5b0695a322d47
iuc
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37 #