Mercurial > repos > iuc > ega_download_client
changeset 2:970fbf3e7db4 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pyega3 commit eb28ccaa03633b3500b38e2eb304c55e1682c489
| author | iuc |
|---|---|
| date | Tue, 14 Jun 2022 17:05:39 +0000 |
| parents | 95e6ae085d2e |
| children | 6070512177f8 |
| files | pyega3.xml |
| diffstat | 1 files changed, 7 insertions(+), 7 deletions(-) [+] |
line wrap: on
line diff
--- a/pyega3.xml Tue Apr 12 11:36:21 2022 +0000 +++ b/pyega3.xml Tue Jun 14 17:05:39 2022 +0000 @@ -1,4 +1,4 @@ -<tool id="pyega3" name="EGA Download Client" version="@TOOL_VERSION@+galaxy0" profile="21.01" > +<tool id="pyega3" name="EGA Download Client" version="@TOOL_VERSION@+galaxy1" profile="21.01" > <macros> <token name="@TOOL_VERSION@">4.0.0</token> </macros> @@ -32,7 +32,7 @@ --max-retries 10 #if $action.range.reference_name --reference-name '$action.range.reference_name' - #if $action.range.start + #if str($action.range.start) --start $action.range.start #end if #if $action.range.end @@ -52,7 +52,7 @@ --max-retries 10 #if $action.range.reference_name --reference-name '$action.range.reference_name' - #if $action.range.start + #if str($action.range.start) --start $action.range.start #end if #if $action.range.end @@ -165,7 +165,7 @@ <param name="action_type" value="download_file"/> <param name="file_id" value="EGAF00001753756"/> <param name="reference_name" value="1"/> - <param name="start" value="100"/> + <param name="start" value="0"/> <param name="end" value="10000"/> <output name="downloaded_file" ftype="bam" md5="e576a38748feec45aa45191f6e902ce2"/> </test> @@ -183,11 +183,11 @@ <param name="id_table" value="filelist2.tabular"/> <param name="id_column" value="1"/> <param name="reference_name" value="1"/> - <param name="start" value="100"/> + <param name="start" value="0"/> <param name="end" value="10000"/> <output_collection name="downloaded_file_collection" count="2"> - <element name="NA19239_genomic_range_1_100_10000" md5="bcdcf18846233cbe5cc8afd95168552c" /> - <element name="NA19240_genomic_range_1_100_10000" md5="e576a38748feec45aa45191f6e902ce2" /> + <element name="NA19239_genomic_range_1_0_10000" md5="bcdcf18846233cbe5cc8afd95168552c" /> + <element name="NA19240_genomic_range_1_0_10000" md5="e576a38748feec45aa45191f6e902ce2" /> </output_collection> </test> </tests>