# HG changeset patch
# User iuc
# Date 1696327145 0
# Node ID e1893fd12fee20e0bc61e500f7ef983ec1138bb7
# Parent  0b67eabbc6e402532a8598e41dd6c0d0a47328ec
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pyega3 commit 9b235992a96145b852de7a6b59bac3a33dcbbcc8

diff -r 0b67eabbc6e4 -r e1893fd12fee pyega3.xml
--- a/pyega3.xml	Thu Sep 28 12:07:04 2023 +0000
+++ b/pyega3.xml	Tue Oct 03 09:59:05 2023 +0000
@@ -237,8 +237,8 @@
 .. class:: Warning mark
 
 	Data is stored unencrypted on the user's Galaxy account. Confidential data from the EGA could be left unprotected when uploaded to a public Galaxy server.
-	Make sure to read the EGA Data Access Agreement ([DAA](https://ega-archive.org/files/Example_DAA.doc)) before uploading any data to Galaxy from the EGA.
-	If this applies to you, we recommend you follow [this link](https://github.com/elixir-europe/GalaxySensitiveData-ELIXIR_IS) for updates on encrypted data at rest.
+	Make sure to read the EGA Data Access Agreement (DAA_) before uploading any data to Galaxy from the EGA.
+	If this applies to you, we recommend you follow the GalaxySensitiveData-ELIXIR-IS_ page for updates on encrypted data at rest.
 
 If you have an EGA account, you can set your EGA credentials in the user preferences menu of Galaxy. Otherwise, default EGA credentials with access to an example dataset will be used.
 
@@ -250,6 +250,8 @@
 - After download completes, file integrity is verified using checksums.
 - pyEGA3 implements the GA4GH-compliant htsget protocol for download of genomic ranges for data files with accompanying index files.
 
+.. _DAA: https://ega-archive.org/files/Example_DAA.doc
+.. _GalaxySensitiveData-ELIXIR-IS: https://github.com/elixir-europe/GalaxySensitiveData-ELIXIR_IS
     ]]></help>
     <citations>
         <citation type="doi">10.1038/ng.3312</citation>