Mercurial > repos > iuc > edger

diff edger.R @ 2:3de72f1f78aa draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/edger commit 910ffba48cb5f981aad1e00b77056bbbec7f9617
author iuc
date Thu, 19 Apr 2018 17:26:20 -0400
parents c469357cf454
children 2aa9dd87aad3
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--- a/edger.R	Tue Jan 30 04:06:46 2018 -0500
+++ b/edger.R	Thu Apr 19 17:26:20 2018 -0400
@@ -486,9 +486,9 @@
     sumStatus <- summary(status)
 
     # Collect counts for differential expression
-    upCount[i] <- sumStatus["Up"]
-    downCount[i] <- sumStatus["Down"]
-    flatCount[i] <- sumStatus["NotSig"]
+    upCount[i] <- sumStatus["Up", ]
+    downCount[i] <- sumStatus["Down", ]
+    flatCount[i] <- sumStatus["NotSig", ]
                                              
     # Write top expressions table
     top <- topTags(res, n=Inf, sort.by="PValue")