comparison edger.R @ 9:21891a3214b9 draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/edger commit 8c4b8f8711df0a4d6fa98fa8a6f91b977395d62c"

8:ea85027d986c

  counts <- counts[, -1]
  countsrows <- nrow(counts)

  # Process factors
  if (is.null(opt$factInput)) {
    factordata <- read.table(opt$factFile, header = TRUE, sep = "\t", strip.white = TRUE)
    # check samples names match
    if (!any(factordata[, 1] %in% colnames(counts))) {
      stop("Sample IDs in factors file and count matrix don't match")
    }
    # order samples as in counts matrix

9:21891a3214b9

  counts <- counts[, -1]
  countsrows <- nrow(counts)

  # Process factors
  if (is.null(opt$factInput)) {
    factordata <- read.table(opt$factFile, header = TRUE, sep = "\t", strip.white = TRUE, stringsAsFactors = TRUE)
    # check samples names match
    if (!any(factordata[, 1] %in% colnames(counts))) {
      stop("Sample IDs in factors file and count matrix don't match")
    }
    # order samples as in counts matrix