Mercurial > repos > iuc > dropletutils

changeset 4:a75b34ff05f0 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/dropletutils/ commit 49840f36c6623746bb7f8eb64bf4bf0cdae9c24e"
author iuc
date Thu, 05 Dec 2019 06:32:08 +0000
parents 2bbf0052aaa9
children d5e4b59d5331
files dropletutils.xml
diffstat 1 files changed, 6 insertions(+), 5 deletions(-) [+]
line wrap: on
line diff
--- a/dropletutils.xml	Tue Oct 15 09:03:33 2019 -0400
+++ b/dropletutils.xml	Thu Dec 05 06:32:08 2019 +0000
@@ -3,7 +3,7 @@
     <description>Utilities for handling droplet-based single-cell RNA-seq data</description>
     <macros>
         <token name="@PACKAGE_VERSION@" >1.2.1</token>
-        <token name="@GALAXY_VERSION@" >4</token>
+        <token name="@GALAXY_VERSION@" >5</token>
         <token name="@TXIN@">tenx.input</token>
         <token name="@TXOUT@">tenx.output</token>
         <xml name="test_dirin" >
@@ -19,6 +19,7 @@
         <requirement type="package" version="@PACKAGE_VERSION@">bioconductor-dropletutils</requirement>
         <requirement type="package" version="1.2_17" >r-matrix</requirement>
         <requirement type="package" version="1.10.1" >bioconductor-scater</requirement>
+        <requirement type="package" version="1">fonts-conda-ecosystem</requirement>
     </requirements>
     <version_command><![CDATA[
     Rscript -e 'packageVersion("DropletUtils")' | grep -oP '\d\.\d\.\d'
@@ -202,7 +203,7 @@
                 <param name="use" value="barcode_rank" />
                 <param name="lower" value="120" />
             </conditional>
-            <output name="plot" value="defs_barcoderankings.png" compare="sim_size" delta="200"/>
+            <output name="plot" value="defs_barcoderankings.png" compare="sim_size" delta="400"/>
         </test>
         <!-- ::: Empty Drops -->
         <test expect_num_outputs="3">
@@ -225,7 +226,7 @@
                     <has_line_matching expression="^998\sCATGAAGCAA\s151\s-166.644236503983\s9.99900009999e-05\sTRUE\s9.99900009999e-05\sTRUE\sTRUE" />
                 </assert_contents>
             </output>
-            <output name="plot" value="defs_emptydrops_150_0002.png" compare="sim_size" delta="100" />
+            <output name="plot" value="defs_emptydrops_150_0002.png" compare="sim_size" delta="400" />
         </test>
         <!-- Other format input tests -->
         <!-- ::: Empty Drops, same as above but input is h5ad -->
@@ -243,7 +244,7 @@
                     <param name="fdr_thresh" value="0.02" />
                 </conditional>
             </conditional>
-            <output name="fileout_h5ad" value="defs_emptydrops_150_0002a.h5ad" compare="sim_size" delta="200" />
+            <output name="fileout_h5ad" value="defs_emptydrops_150_0002a.h5ad" compare="sim_size" delta="400" />
             <output name="table" >
                 <assert_contents>
                     <has_n_columns n="9" />
@@ -252,7 +253,7 @@
                     <has_line_matching expression="^1114\sTCCGAAGCAA\s182\s-196.181449214729\s9.99900009999e-05\sTRUE\s0.000126279506880773\sTRUE\sTRUE" />
                 </assert_contents>
             </output>
-            <output name="plot" value="defs_emptydrops_150_0002a.png" compare="sim_size" delta="100" />
+            <output name="plot" value="defs_emptydrops_150_0002a.png" compare="sim_size" delta="400" />
         </test>
         <!-- Output a directory -->
         <test expect_num_outputs="3">