# HG changeset patch # User iuc # Date 1443211020 14400 # Node ID b19cb9385f288bc84430e882f4d847ec101a30a8 # Parent 36fe30ece23b0b4786f6602b9cc23282d9687538 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/dexseq commit 93762b03363b176c3bc9bff78e34db8b2c1971b1-dirty diff -r 36fe30ece23b -r b19cb9385f28 dexseq.xml --- a/dexseq.xml Fri Sep 25 14:05:00 2015 -0400 +++ b/dexseq.xml Fri Sep 25 15:57:00 2015 -0400 @@ -1,7 +1,7 @@ Determines differential exon usage from count tables - dexseq + dexseq diff -r 36fe30ece23b -r b19cb9385f28 tool_dependencies.xml --- a/tool_dependencies.xml Fri Sep 25 14:05:00 2015 -0400 +++ b/tool_dependencies.xml Fri Sep 25 15:57:00 2015 -0400 @@ -1,104 +1,6 @@ - - - - - - - - - - - - - - - - - - - - - - - - - - - - - https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/Cairo_1.5-8.tar.gz - https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/rjson_0.2.15.tar.gz - https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/getopt_1.20.0.tar.gz - https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/lambda.r_1.1.7.tar.gz - https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/futile.options_1.0.0.tar.gz - https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/futile.logger_1.4.1.tar.gz - https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/snow_0.3-13.tar.gz - https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/BiocParallel_1.2.20.tar.gz - https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/BiocGenerics_0.14.0.tar.gz - https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/Biobase_2.28.0.tar.gz - https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/S4Vectors_0.6.4.tar.gz - https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/IRanges_2.2.7.tar.gz - https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/GenomeInfoDb_1.4.2.tar.gz - https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/XVector_0.8.0.tar.gz - https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/GenomicRanges_1.20.5.tar.gz - https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/Rcpp_0.12.0.tar.gz - https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/RcppArmadillo_0.5.400.2.0.tar.gz - https://github.cfreetom/bgruening/download_store/raw/master/DEXSeq_1.14.2/DBI_0.3.1.tar.gz - https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/RSQLite_1.0.0.tar.gz - https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/AnnotationDbi_1.30.1.tar.gz - https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/XML_3.98-1.3.tar.gz - https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/xtable_1.7-4.tar.gz - https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/annotate_1.46.1.tar.gz - https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/survival_2.38-3.tar.gz - https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/genefilter_1.50.0.tar.gz - https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/lattice_0.20-33.tar.gz - https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/locfit_1.5-9.1.tar.gz - https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/RColorBrewer_1.1-2.tar.gz - https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/geneplotter_1.46.0.tar.gz - https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/plyr_1.8.3.tar.gz - https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/digest_0.6.8.tar.gz - https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/gtable_0.1.2.tar.gz - https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/stringi_0.5-5.tar.gz - https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/magrittr_1.5.tar.gz - https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/stringr_1.0.0.tar.gz - https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/reshape2_1.4.1.tar.gz - 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https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/rpart_4.1-10.tar.gz - https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/nnet_7.3-11.tar.gz - https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/acepack_1.3-3.3.tar.gz - https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/foreign_0.8-66.tar.gz - https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/gridExtra_2.0.0.tar.gz - https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/Hmisc_3.16-0.tar.gz - https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/DESeq2_1.8.1.tar.gz - https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/bitops_1.0-6.tar.gz - https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/RCurl_1.95-4.7.tar.gz - https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/biomaRt_2.24.0.tar.gz - https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/hwriter_1.3.2.tar.gz - https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/zlibbioc_1.14.0.tar.gz - https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/Biostrings_2.36.4.tar.gz - https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/Rsamtools_1.20.4.tar.gz - https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/statmod_1.4.21.tar.gz - https://github.com/bgruening/download_store/raw/master/DEXSeq_1.14.2/DEXSeq_1.14.2.tar.gz - - - $INSTALL_DIR/DEXSeq/ - - - - - DEXSeq in version - + +