Mercurial > repos > iuc > dexseq
comparison dexseq_helper.py @ 7:469c0d7489bd draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/dexseq commit 93f63600a8d492e6c9006c1426fbae84de5ca232
| author | iuc |
|---|---|
| date | Sun, 29 Jan 2017 06:59:23 -0500 |
| parents | 28a2181df3b9 |
| children | 3762d6644ec4 |
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| 6:e8ca8941952a | 7:469c0d7489bd |
|---|---|
| 1 | |
| 2 from galaxy.tools.parameters import DataToolParameter | |
| 3 | |
| 4 def validate_input( trans, error_map, param_values, page_param_map ): | 1 def validate_input( trans, error_map, param_values, page_param_map ): |
| 5 """ | 2 """ |
| 6 Validates the user input, before execution. | 3 Validates the user input, before execution. |
| 7 """ | 4 """ |
| 8 factors = param_values['rep_factorName'] | 5 factors = param_values['rep_factorName'] |
| 17 factor_duplication = True | 14 factor_duplication = True |
| 18 break | 15 break |
| 19 factor_name_list.append( fn ) | 16 factor_name_list.append( fn ) |
| 20 | 17 |
| 21 level_name_list = list() | 18 level_name_list = list() |
| 22 factor_index_list = list() | |
| 23 | 19 |
| 24 for level in ['factorLevel1', 'factorLevel2']: | 20 for level in ['factorLevel1', 'factorLevel2']: |
| 25 # level names under one factor should be unique | 21 # level names under one factor should be unique |
| 26 fl = factor[level] | 22 fl = factor[level] |
| 27 if fl in level_name_list: | 23 if fl in level_name_list: |
| 36 | 32 |
| 37 if factor_duplication: | 33 if factor_duplication: |
| 38 error_map['rep_factorName'] = [ dict() for t in factors ] | 34 error_map['rep_factorName'] = [ dict() for t in factors ] |
| 39 for i in range( len( factors ) ): | 35 for i in range( len( factors ) ): |
| 40 error_map['rep_factorName'][i]['factorName'] = 'Factor names need to be unique.' | 36 error_map['rep_factorName'][i]['factorName'] = 'Factor names need to be unique.' |
| 41 |