# HG changeset patch
# User iuc
# Date 1441365337 14400
# Node ID 1ae1da9a5e66124013f3ffe88adcad799c2f531d
# Parent  9c706d3721abc15eb7d0bf0753200b9064ac88d9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 521ea70d49fee701db4d832823644c8c3050f8f2-dirty

diff -r 9c706d3721ab -r 1ae1da9a5e66 deseq2.xml
--- a/deseq2.xml	Fri Sep 04 07:11:53 2015 -0400
+++ b/deseq2.xml	Fri Sep 04 07:15:37 2015 -0400
@@ -2,12 +2,12 @@
     <description>Determines differentially expressed features from count tables</description>
     <requirements>
         <!-- odering is crucial, otherwise R will override the ENV variables from deseq2 -->
-        <requirement type="package" version="3.1.0">R</requirement>
+        <requirement type="package" version="3.2.1">R</requirement>
         <requirement type="package" version="1.8.1">deseq2</requirement>
     </requirements>
     <version_command>
     <![CDATA[
-        echo $(R --version | grep version | grep -v GNU)", DESeq2 version" $(R --vanilla --slave -e "library(DESeq2) &&
+        echo $(R --version | grep version | grep -v GNU)", DESeq2 version" $(R --vanilla --slave -e "library(DESeq2) ;
         cat(sessionInfo()\$otherPkgs\$DESeq2\$Version)" 2> /dev/null | grep -v -i "WARNING: ")
     ]]>
     </version_command>
diff -r 9c706d3721ab -r 1ae1da9a5e66 tool_dependencies.xml
--- a/tool_dependencies.xml	Fri Sep 04 07:11:53 2015 -0400
+++ b/tool_dependencies.xml	Fri Sep 04 07:15:37 2015 -0400
@@ -4,6 +4,6 @@
         <repository changeset_revision="d973c8e9b29e" name="package_r_3_2_0" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
     </package>
     <package name="deseq2" version="1.8.1">
-       <repository changeset_revision="388cc9221c2c" name="package_deseq2_1_8_1" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+       <repository changeset_revision="f6cbeb414672" name="package_deseq2_1_8_1" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
     </package>
 </tool_dependency>