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comparison deseq2.xml @ 13:00ff49f9e750 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 1c0a208ea184713d5b38c5575861ecf6ce7decdd
author iuc
date Thu, 22 Oct 2015 19:43:55 -0400
parents 69b7590cb486
children 0fb62f07f8b7
comparison
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12:69b7590cb486 13:00ff49f9e750
168 ------ ---------------------------------------------------------- 168 ------ ----------------------------------------------------------
169 1 Gene Identifiers 169 1 Gene Identifiers
170 2 mean normalised counts, averaged over all samples from both conditions 170 2 mean normalised counts, averaged over all samples from both conditions
171 3 the logarithm (to basis 2) of the fold change (See the note in inputs section) 171 3 the logarithm (to basis 2) of the fold change (See the note in inputs section)
172 4 standard error estimate for the log2 fold change estimate 172 4 standard error estimate for the log2 fold change estimate
173 5 p value for the statistical significance of this change 173 5 Wald statistic
174 6 p value adjusted for multiple testing with the Benjamini-Hochberg procedure 174 6 p value for the statistical significance of this change
175 7 p value adjusted for multiple testing with the Benjamini-Hochberg procedure
175 which controls false discovery rate (FDR) 176 which controls false discovery rate (FDR)
176 ====== ========================================================== 177 ====== ==========================================================
177 178
178 179
179 .. _DESeq2: http://master.bioconductor.org/packages/release/bioc/html/DESeq2.html 180 .. _DESeq2: http://master.bioconductor.org/packages/release/bioc/html/DESeq2.html