Mercurial > repos > iuc > data_manager_star_index_builder
annotate data_manager_conf.xml @ 5:1bd6dc820044 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_star_index_builder commit 39b9b154845ecf517f7d9e9d76c386b473c3ebd2
| author | iuc |
|---|---|
| date | Wed, 18 Jul 2018 13:25:56 -0400 |
| parents | 613b120db55c |
| children | 54cddd903437 |
| rev | line source |
|---|---|
|
0
cc25c735cae1
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_star_index_builder commit 3265247e909410db2a6d6087a2c0d3a9885c120c
iuc
parents:
diff
changeset
|
1 <?xml version="1.0"?> |
|
cc25c735cae1
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_star_index_builder commit 3265247e909410db2a6d6087a2c0d3a9885c120c
iuc
parents:
diff
changeset
|
2 <data_managers> |
|
2
c5f5ec715548
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_star_index_builder commit 0d434bca5083e908114d93e11094e48f49b98ed1
iuc
parents:
0
diff
changeset
|
3 <data_manager tool_file="data_manager/rna_star_index_builder.xml" id="rna_star_index_builder" version="0.0.3"> |
|
c5f5ec715548
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_star_index_builder commit 0d434bca5083e908114d93e11094e48f49b98ed1
iuc
parents:
0
diff
changeset
|
4 <data_table name="rnastar_index2"> |
|
0
cc25c735cae1
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_star_index_builder commit 3265247e909410db2a6d6087a2c0d3a9885c120c
iuc
parents:
diff
changeset
|
5 <output> |
|
cc25c735cae1
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_star_index_builder commit 3265247e909410db2a6d6087a2c0d3a9885c120c
iuc
parents:
diff
changeset
|
6 <column name="value" /> |
|
cc25c735cae1
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_star_index_builder commit 3265247e909410db2a6d6087a2c0d3a9885c120c
iuc
parents:
diff
changeset
|
7 <column name="dbkey" /> |
|
cc25c735cae1
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_star_index_builder commit 3265247e909410db2a6d6087a2c0d3a9885c120c
iuc
parents:
diff
changeset
|
8 <column name="name" /> |
|
cc25c735cae1
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_star_index_builder commit 3265247e909410db2a6d6087a2c0d3a9885c120c
iuc
parents:
diff
changeset
|
9 <column name="path" output_ref="out_file" > |
|
cc25c735cae1
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_star_index_builder commit 3265247e909410db2a6d6087a2c0d3a9885c120c
iuc
parents:
diff
changeset
|
10 <move type="directory" relativize_symlinks="True"> |
|
2
c5f5ec715548
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_star_index_builder commit 0d434bca5083e908114d93e11094e48f49b98ed1
iuc
parents:
0
diff
changeset
|
11 <!-- <source>${path}</source> |
|
c5f5ec715548
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_star_index_builder commit 0d434bca5083e908114d93e11094e48f49b98ed1
iuc
parents:
0
diff
changeset
|
12 out_file.extra_files_path is used as base by default |
|
c5f5ec715548
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_star_index_builder commit 0d434bca5083e908114d93e11094e48f49b98ed1
iuc
parents:
0
diff
changeset
|
13 if no source, eg for type=directory, then refers to base |
|
c5f5ec715548
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_star_index_builder commit 0d434bca5083e908114d93e11094e48f49b98ed1
iuc
parents:
0
diff
changeset
|
14 --> |
|
c5f5ec715548
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_star_index_builder commit 0d434bca5083e908114d93e11094e48f49b98ed1
iuc
parents:
0
diff
changeset
|
15 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">${dbkey}/rnastar_index2/${value}</target> |
|
0
cc25c735cae1
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_star_index_builder commit 3265247e909410db2a6d6087a2c0d3a9885c120c
iuc
parents:
diff
changeset
|
16 </move> |
|
2
c5f5ec715548
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_star_index_builder commit 0d434bca5083e908114d93e11094e48f49b98ed1
iuc
parents:
0
diff
changeset
|
17 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/${dbkey}/rnastar_index2/${value}/${path}</value_translation> |
|
0
cc25c735cae1
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_star_index_builder commit 3265247e909410db2a6d6087a2c0d3a9885c120c
iuc
parents:
diff
changeset
|
18 <value_translation type="function">abspath</value_translation> |
|
cc25c735cae1
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_star_index_builder commit 3265247e909410db2a6d6087a2c0d3a9885c120c
iuc
parents:
diff
changeset
|
19 </column> |
|
3
613b120db55c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_star_index_builder commit 811025ef8d9f60f4b02d66f7218127669fb42e0b
iuc
parents:
2
diff
changeset
|
20 <column name="with-gtf" /> |
|
0
cc25c735cae1
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_star_index_builder commit 3265247e909410db2a6d6087a2c0d3a9885c120c
iuc
parents:
diff
changeset
|
21 </output> |
|
cc25c735cae1
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_star_index_builder commit 3265247e909410db2a6d6087a2c0d3a9885c120c
iuc
parents:
diff
changeset
|
22 </data_table> |
|
cc25c735cae1
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_star_index_builder commit 3265247e909410db2a6d6087a2c0d3a9885c120c
iuc
parents:
diff
changeset
|
23 </data_manager> |
|
cc25c735cae1
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_star_index_builder commit 3265247e909410db2a6d6087a2c0d3a9885c120c
iuc
parents:
diff
changeset
|
24 </data_managers> |