Mercurial > repos > iuc > data_manager_snpeff
comparison data_manager/data_manager_snpEff_databases.xml @ 8:fbb459120c29 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_snpeff commit 036feef4f46b5aedabc5080c8fa4bc00d9c30d95"
| author | iuc |
|---|---|
| date | Wed, 12 Feb 2020 23:33:29 +0000 |
| parents | a6e6e8415b7f |
| children |
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| 7:71821eb11274 | 8:fbb459120c29 |
|---|---|
| 1 <tool id="data_manager_snpeff_databases" name="SnpEff Databases" version="4.3r" tool_type="manage_data"> | 1 <tool id="data_manager_snpeff_databases" name="SnpEff Databases" version="4.3.1t" tool_type="manage_data" profile="18.09"> |
| 2 <description>Read the list of available SnpEff databases</description> | 2 <description>Read the list of available SnpEff databases</description> |
| 3 <requirements> | 3 <requirements> |
| 4 <requirement type="package" version="4.3.1r">snpeff</requirement> | 4 <requirement type="package" version="4.3.1t">snpeff</requirement> |
| 5 </requirements> | 5 </requirements> |
| 6 <command detect_errors="exit_code"><![CDATA[ | 6 <command detect_errors="exit_code"><![CDATA[ |
| 7 python '$__tool_directory__/data_manager_snpEff_databases.py' '$out_file' | 7 python '$__tool_directory__/data_manager_snpEff_databases.py' '$out_file' |
| 8 ]]></command> | 8 ]]></command> |
| 9 <inputs> | 9 <inputs> |
| 14 <tests> | 14 <tests> |
| 15 <test> | 15 <test> |
| 16 <output name="out_file"> | 16 <output name="out_file"> |
| 17 <assert_contents> | 17 <assert_contents> |
| 18 <!-- Check that a genome was added --> | 18 <!-- Check that a genome was added --> |
| 19 <has_text text="GRCh38.76" /> | 19 <has_text text="GRCh38.86" /> |
| 20 </assert_contents> | 20 </assert_contents> |
| 21 </output> | 21 </output> |
| 22 </test> | 22 </test> |
| 23 </tests> | 23 </tests> |
| 24 <help><![CDATA[ | 24 <help><![CDATA[ |