Mercurial > repos > iuc > data_manager_selection_background

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_selection_background commit bbba39ae993250a1e7301965b03c12621513775e"
author iuc
date Wed, 25 Aug 2021 21:07:32 +0000
parents f6d4b709b0bf
children
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4a643ee2e4b8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_selection_background commit af3bfbbd3f1236bf96a25bcb8483f2889295ec0c"
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1 <?xml version="1.0"?>
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90e46fb64edf "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_selection_background commit bbba39ae993250a1e7301965b03c12621513775e"
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2 <tool id="data_manager_selection_background" name="Add background sequences" tool_type="manage_data" version="1.0.3">
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4a643ee2e4b8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_selection_background commit af3bfbbd3f1236bf96a25bcb8483f2889295ec0c"
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3 <description>for selection analysis</description>
4a643ee2e4b8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_selection_background commit af3bfbbd3f1236bf96a25bcb8483f2889295ec0c"
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4 <command detect_errors="exit_code">
4a643ee2e4b8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_selection_background commit af3bfbbd3f1236bf96a25bcb8483f2889295ec0c"
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5 <![CDATA[
3
90e46fb64edf "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_selection_background commit bbba39ae993250a1e7301965b03c12621513775e"
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6 python '$__tool_directory__/data_manager_selection_background.py' --output '$selection_background_json'
90e46fb64edf "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_selection_background commit bbba39ae993250a1e7301965b03c12621513775e"
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7 #if $dbkey:
90e46fb64edf "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_selection_background commit bbba39ae993250a1e7301965b03c12621513775e"
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8 --dbkey '${dbkey}'
90e46fb64edf "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_selection_background commit bbba39ae993250a1e7301965b03c12621513775e"
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9 #end if
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4a643ee2e4b8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_selection_background commit af3bfbbd3f1236bf96a25bcb8483f2889295ec0c"
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10 --label '${label}'
4a643ee2e4b8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_selection_background commit af3bfbbd3f1236bf96a25bcb8483f2889295ec0c"
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11 #if $data_source.source_selector == 'history':
4a643ee2e4b8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_selection_background commit af3bfbbd3f1236bf96a25bcb8483f2889295ec0c"
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12 --dataset '$data_source.dataset'
4a643ee2e4b8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_selection_background commit af3bfbbd3f1236bf96a25bcb8483f2889295ec0c"
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13 #else:
4a643ee2e4b8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_selection_background commit af3bfbbd3f1236bf96a25bcb8483f2889295ec0c"
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14 --uri '$data_source.uri'
4a643ee2e4b8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_selection_background commit af3bfbbd3f1236bf96a25bcb8483f2889295ec0c"
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15 #end if
4a643ee2e4b8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_selection_background commit af3bfbbd3f1236bf96a25bcb8483f2889295ec0c"
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16 ]]>
4a643ee2e4b8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_selection_background commit af3bfbbd3f1236bf96a25bcb8483f2889295ec0c"
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17 </command>
4a643ee2e4b8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_selection_background commit af3bfbbd3f1236bf96a25bcb8483f2889295ec0c"
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18 <inputs>
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19 <param argument="--dbkey" type="text" label="ID for this entry" help="Enter a unique identifier, or leave blank for a randomly generated UUID" />
4a643ee2e4b8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_selection_background commit af3bfbbd3f1236bf96a25bcb8483f2889295ec0c"
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20 <param argument="--label" type="text" label="Label for this entry" help="This will be displayed in the list of available backgrounds" />
4a643ee2e4b8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_selection_background commit af3bfbbd3f1236bf96a25bcb8483f2889295ec0c"
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21 <conditional name="data_source">
4a643ee2e4b8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_selection_background commit af3bfbbd3f1236bf96a25bcb8483f2889295ec0c"
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22 <param name="source_selector" type="select" label="Source for the data">
4a643ee2e4b8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_selection_background commit af3bfbbd3f1236bf96a25bcb8483f2889295ec0c"
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23 <option value="uri">URL download</option>
4a643ee2e4b8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_selection_background commit af3bfbbd3f1236bf96a25bcb8483f2889295ec0c"
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24 <option value="history">Use a history dataset</option>
4a643ee2e4b8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_selection_background commit af3bfbbd3f1236bf96a25bcb8483f2889295ec0c"
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25 </param>
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26 <when value="uri">
4a643ee2e4b8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_selection_background commit af3bfbbd3f1236bf96a25bcb8483f2889295ec0c"
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27 <param argument="--uri" type="text" label="URI for the sequences" />
4a643ee2e4b8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_selection_background commit af3bfbbd3f1236bf96a25bcb8483f2889295ec0c"
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28 </when>
4a643ee2e4b8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_selection_background commit af3bfbbd3f1236bf96a25bcb8483f2889295ec0c"
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29 <when value="history">
4a643ee2e4b8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_selection_background commit af3bfbbd3f1236bf96a25bcb8483f2889295ec0c"
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30 <param argument="--dataset" type="data" format="fasta" />
4a643ee2e4b8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_selection_background commit af3bfbbd3f1236bf96a25bcb8483f2889295ec0c"
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31 </when>
4a643ee2e4b8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_selection_background commit af3bfbbd3f1236bf96a25bcb8483f2889295ec0c"
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32 </conditional>
4a643ee2e4b8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_selection_background commit af3bfbbd3f1236bf96a25bcb8483f2889295ec0c"
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33 </inputs>
4a643ee2e4b8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_selection_background commit af3bfbbd3f1236bf96a25bcb8483f2889295ec0c"
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34 <outputs>
4a643ee2e4b8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_selection_background commit af3bfbbd3f1236bf96a25bcb8483f2889295ec0c"
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35 <data format="data_manager_json" name="selection_background_json" />
4a643ee2e4b8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_selection_background commit af3bfbbd3f1236bf96a25bcb8483f2889295ec0c"
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36 </outputs>
4a643ee2e4b8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_selection_background commit af3bfbbd3f1236bf96a25bcb8483f2889295ec0c"
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37 <tests>
4a643ee2e4b8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_selection_background commit af3bfbbd3f1236bf96a25bcb8483f2889295ec0c"
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38 <test>
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39 <param name="dbkey" value="CoV2-ORF6" />
4a643ee2e4b8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_selection_background commit af3bfbbd3f1236bf96a25bcb8483f2889295ec0c"
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40 <param name="label" value="SARS-CoV-2: ORF6" />
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41 <param name="source_selector" value="history" />
4a643ee2e4b8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_selection_background commit af3bfbbd3f1236bf96a25bcb8483f2889295ec0c"
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42 <param name="dataset" value="selection-in1.fa" />
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f6d4b709b0bf "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_selection_background commit f3390425582c26c4018eb13eb0f8f2a85189ce08"
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43 <output name="selection_background_json" file="selection-out1.json" />
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4a643ee2e4b8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_selection_background commit af3bfbbd3f1236bf96a25bcb8483f2889295ec0c"
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44 </test>
4a643ee2e4b8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_selection_background commit af3bfbbd3f1236bf96a25bcb8483f2889295ec0c"
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45 </tests>
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46 <help>
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47 </help>
4a643ee2e4b8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_selection_background commit af3bfbbd3f1236bf96a25bcb8483f2889295ec0c"
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48 </tool>