Mercurial > repos > iuc > data_manager_plant_tribes_scaffolds_downloader
comparison data_manager/data_manager_plant_tribes_scaffolds_download.py @ 2:b3fc4b35e3f5 draft
Uploaded
| author | iuc |
|---|---|
| date | Tue, 14 Feb 2017 13:50:55 -0500 |
| parents | f5e3438468c7 |
| children | fe92a529ed01 |
comparison
equal
deleted
inserted
replaced
| 1:f5e3438468c7 | 2:b3fc4b35e3f5 |
|---|---|
| 75 data_manager_dict = {} | 75 data_manager_dict = {} |
| 76 data_table_entry = {} | 76 data_table_entry = {} |
| 77 # Download the scaffolds data. | 77 # Download the scaffolds data. |
| 78 work_directory = os.path.abspath(os.path.join(os.getcwd(), 'scaffolds')) | 78 work_directory = os.path.abspath(os.path.join(os.getcwd(), 'scaffolds')) |
| 79 make_directory(work_directory) | 79 make_directory(work_directory) |
| 80 file_path = url_download(web_url) | 80 file_path = url_download(web_url, work_directory) |
| 81 extract_archive(file_path, work_directory) | 81 extract_archive(file_path, work_directory) |
| 82 os.remove(file_path) | 82 os.remove(file_path) |
| 83 # Move the scaffolds data files into defined output directory. | 83 # Move the scaffolds data files into defined output directory. |
| 84 target_directory = make_directory(target_file_path) | 84 target_directory = make_directory(target_file_path) |
| 85 move_files(work_directory, target_directory) | 85 move_files(work_directory, target_directory) |
| 93 data_table_entry['path'] = full_path | 93 data_table_entry['path'] = full_path |
| 94 data_table_entry['description'] = description | 94 data_table_entry['description'] = description |
| 95 # Download the default configuration files. | 95 # Download the default configuration files. |
| 96 work_directory = os.path.abspath(os.path.join(os.getcwd(), 'configs')) | 96 work_directory = os.path.abspath(os.path.join(os.getcwd(), 'configs')) |
| 97 make_directory(work_directory) | 97 make_directory(work_directory) |
| 98 file_path = url_download(config_web_url) | 98 file_path = url_download(config_web_url, work_directory) |
| 99 extract_archive(file_path, work_directory) | 99 extract_archive(file_path, work_directory) |
| 100 os.remove(file_path) | 100 os.remove(file_path) |
| 101 shutil.rmtree(target_directory) | 101 shutil.rmtree(target_directory) |
| 102 # Move the scaffolds data files into defined output directory. | 102 # Move the scaffolds data files into defined output directory. |
| 103 target_directory = make_directory(target_file_path) | 103 target_directory = make_directory(target_file_path) |