# HG changeset patch # User iuc # Date 1637176551 0 # Node ID d9a238ff2bc3b2f9164c5ef69b03bbca785b9ed0 # Parent 3e344aedb2672fb53aa85d53da5a5ac4633ecd79 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_interproscan commit 7fbeae66de8617e525cd968a2ef89b0be448a618" diff -r 3e344aedb267 -r d9a238ff2bc3 data_manager/interproscan.py --- a/data_manager/interproscan.py Mon Nov 15 17:20:14 2021 +0000 +++ b/data_manager/interproscan.py Wed Nov 17 19:15:51 2021 +0000 @@ -97,7 +97,15 @@ download_file(DATA_URL.format(version=tag), dest_tar) print("Finished, now checking md5...") - md5_computed = hashlib.md5(open(dest_tar, 'rb').read()).hexdigest() + m = hashlib.md5() + blocksize = 2**20 + with open(dest_tar, 'rb') as tarball: + while True: + buf = tarball.read(blocksize) + if not buf: + break + m.update(buf) + md5_computed = m.hexdigest() if not md5.startswith(md5_computed): raise RuntimeError("MD5 check failed: computed '%s', expected '%s'" % (md5_computed, md5)) @@ -111,7 +119,7 @@ shutil.move(os.path.join(output_directory, 'interproscan-%s' % tag, 'core/jms-implementation/support-mini-x86-32/data/'), os.path.join(output_directory, 'data')) else: print("Moving data files around...") - shutil.move(os.path.join(output_directory, 'interproscan-%s' % tag), os.path.join(output_directory, 'data')) + shutil.move(os.path.join(output_directory, 'interproscan-%s' % tag, 'data'), os.path.join(output_directory, 'data')) print("Done, removing tarball and unneeded files...") os.remove(dest_tar) diff -r 3e344aedb267 -r d9a238ff2bc3 data_manager/interproscan.xml --- a/data_manager/interproscan.xml Mon Nov 15 17:20:14 2021 +0000 +++ b/data_manager/interproscan.xml Wed Nov 17 19:15:51 2021 +0000 @@ -4,7 +4,7 @@ requests