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planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_gemini_downloader commit 2bffef0f9e5d35ae0af1f74f044b5b1431b01d32-dirty
author iuc
date Tue, 29 Dec 2015 10:58:29 -0500
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<tool id="data_manager_gemini_download" name="GEMINI Download" version="0.18.1" tool_type="manage_data">
    <description>Download a new database</description>
    <requirements>
        <requirement type="package" version="0.18.1">gemini</requirement>
    </requirements>
    <stdio>
        <exit_code range=":-1"  level="fatal" description="Error: Cannot open file" />
        <exit_code range="1:"  level="fatal" description="Error" />
    </stdio>
    <command interpreter="python">
        data_manager_gemini_download.py "$out_file"
    </command>
    <inputs>
        <param name="cadd" type="boolean" truevalue="--extra cadd_score" falsevalue="" checked="True"
            label="Download CADD scores for GEMINI database annotation" help="(--extra cadd_score)"/>
        <param name="gerp_bp" type="boolean" truevalue="--extra gerp_bp" falsevalue="" checked="True"
            label="Download GERP for GEMINI database annotation" help="(--extra gerp_bp)"/>
    </inputs>
    <outputs>
           <data name="out_file" format="data_manager_json" label="${tool.name}"/>
    </outputs>
    <tests>
    </tests>
    <help>

This tool downloads the GEMINI databases.

For details about this tool, please go to http://gemini.readthedocs.org

    </help>
    <citations>
        <citation type="doi">10.1371/journal.pcbi.1003153</citation>
        <yield />
    </citations>
</tool>