# HG changeset patch
# User iuc
# Date 1589447284 0
# Node ID 6b9c9c82846f57df939f21d98ae4ef9132ffeb26
# Parent  578b6fcc36e1e8dd81e1d43624b83f66589ddcbd
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gemini_database_downloader commit 73ea765822334d9afc2f7b2ef4ddfc1a3fd4289e"

diff -r 578b6fcc36e1 -r 6b9c9c82846f data_manager/data_manager_gemini_download.py
--- a/data_manager/data_manager_gemini_download.py	Fri Jan 11 17:18:03 2019 -0500
+++ b/data_manager/data_manager_gemini_download.py	Thu May 14 09:08:04 2020 +0000
@@ -16,9 +16,9 @@
 
 def main():
     today = datetime.date.today()
-    params = json.loads( open( sys.argv[1] ).read() )
-    target_directory = params[ 'output_data' ][0]['extra_files_path']
-    os.mkdir( target_directory )
+    params = json.loads(open(sys.argv[1]).read())
+    target_directory = params['output_data'][0]['extra_files_path']
+    os.mkdir(target_directory)
 
     # Generate a minimal configuration file for GEMINI update
     # to instruct the tool to download the annotation data into a
@@ -39,7 +39,7 @@
         params['param_dict']['gerp_bp'],
         params['param_dict']['cadd']
     )
-    subprocess.check_call( cmd, shell=True, env=gemini_env )
+    subprocess.check_call(cmd, shell=True, env=gemini_env)
 
     # GEMINI tool wrappers that need access to the annotation files
     # are supposed to symlink them into a gemini/data subfolder of
@@ -83,8 +83,8 @@
     }
 
     # ... and save it to the json results file
-    with open( sys.argv[1], 'wb' ) as out:
-        out.write( json.dumps( data_manager_dict ) )
+    with open(sys.argv[1], 'w') as out:
+        out.write(json.dumps(data_manager_dict))
 
 
 if __name__ == "__main__":