# HG changeset patch # User iuc # Date 1547245083 18000 # Node ID 578b6fcc36e1e8dd81e1d43624b83f66589ddcbd # Parent abfa0a7f963aecfae736fe5c51c6783d0c0f2619 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gemini_database_downloader commit 62ed732cba355e695181924a8ed4cce49ca21c59 diff -r abfa0a7f963a -r 578b6fcc36e1 data_manager/data_manager_gemini_download.py --- a/data_manager/data_manager_gemini_download.py Wed Dec 19 12:35:59 2018 -0500 +++ b/data_manager/data_manager_gemini_download.py Fri Jan 11 17:18:03 2019 -0500 @@ -51,6 +51,19 @@ config['annotation_dir'] = 'gemini/data' write_gemini_config(config, config_file) + # The name of the database should reflect whether it was built with or + # without the optional GERP-bp data, the CADD scores, or both. + # This builds up the correpsonding part of the name: + anno_extras = [] + if params['param_dict']['gerp_bp']: + anno_extras.append('GERP') + if params['param_dict']['cadd']: + anno_extras.append('CADD') + if anno_extras: + anno_desc = ' w/ ' + ' & '.join(anno_extras) + else: + anno_desc = '' + # Finally, we prepare the metadata for the new data table record ... data_manager_dict = { 'data_tables': { @@ -60,7 +73,9 @@ 'dbkey': 'hg19', 'version': params['param_dict']['gemini_db_version'], 'name': - 'GEMINI annotations (%s snapshot)' % today.isoformat(), + 'GEMINI annotations%s (%s snapshot)' % ( + anno_desc, today.isoformat() + ), 'path': './%s' % today.isoformat() } ] diff -r abfa0a7f963a -r 578b6fcc36e1 data_manager/data_manager_gemini_download.xml --- a/data_manager/data_manager_gemini_download.xml Wed Dec 19 12:35:59 2018 -0500 +++ b/data_manager/data_manager_gemini_download.xml Fri Jan 11 17:18:03 2019 -0500 @@ -1,8 +1,8 @@ - + the annotation files required by the GEMINI suite of tools - 0.18.1 - 181 + 0.20.1 + 200 gemini