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view data_manager_conf.xml @ 7:b68b5cd8b58a draft

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planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_gemini_database_downloader commit 2bffef0f9e5d35ae0af1f74f044b5b1431b01d32-dirty
author iuc
date Tue, 29 Dec 2015 11:02:53 -0500
parents 839086b394ba
children 8885ab36d6b5
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<?xml version="1.0"?>
<data_managers>
    <data_manager tool_file="data_manager/data_manager_gemini_download.xml" id="data_manager_gemini_download" >
        <data_table name="gemini_databases">  <!-- Defines a Data Table to be modified. -->
            <output> <!-- Handle the output of the Data Manager Tool -->
                <column name="value" /> <!-- columns that are going to be specified by the Data Manager Tool -->
                <column name="dbkey" /> <!-- columns that are going to be specified by the Data Manager Tool -->
                <column name="name" />  <!-- columns that are going to be specified by the Data Manager Tool -->
                <column name="path" output_ref="out_file" >
                    <move type="directory" relativize_symlinks="True">
                        <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">gemini/data/${dbkey}/${value}</target>
                    </move>
                    <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/gemini/data/${dbkey}/${value}/gemini/data/</value_translation>
                    <value_translation type="function">abspath</value_translation>
                </column>
            </output>
        </data_table>
    </data_manager>
</data_managers>