Mercurial > repos > iuc > data_manager_funannotate
view data_manager/funannotate.xml @ 0:22777795bb5f draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_funannotate commit 9613152729099079c7465c3d5d42005ef22ca91e"
author | iuc |
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date | Thu, 26 Aug 2021 06:51:01 +0000 |
parents | |
children | 1a0230433e1a |
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<tool id="data_manager_funannotate" name="Funannotate data manager" version="0.0.1" tool_type="manage_data" profile="20.01"> <requirements> <requirement type="package" version="1.8.7">funannotate</requirement> </requirements> <version_command>funannotate check --show-versions</version_command> <command detect_errors="exit_code"><![CDATA[ python '$__tool_directory__/funannotate.py' $partial_data \$(date +'%Y-%m-%d-%H%M%S') 'funannotate' '${output_file}' ]]></command> <inputs> <param name="partial_data" type="hidden" value="" help="Used for testing"/> </inputs> <outputs> <data name="output_file" format="data_manager_json"/> </outputs> <tests> <test> <param name="partial_data" value="--partial"/> <output name="output_file"> <assert_contents> <has_text text="Funannotate database "/> <has_text text='"format_version": "1.0"'/> </assert_contents> </output> </test> </tests> <help><![CDATA[ This data managers fetches data from various databases for the funannotate annotation tool and updates the funannotate data table. .. _funannotate: https://funannotate.readthedocs.io ]]></help> <citations> <citation type="doi">10.5281/zenodo.4054262</citation> </citations> </tool>