Mercurial > repos > iuc > data_manager_fetch_refseq
changeset 3:4314700c39d5 draft default tip
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_fetch_refseq commit f633fe1d97bedff14dbbffcbcc028a3ce9d1d1f2"
author | iuc |
---|---|
date | Sun, 19 Apr 2020 18:43:18 +0000 |
parents | f0b1b5b4d227 |
children | |
files | data_manager/fetch_refseq.xml data_manager_conf.xml |
diffstat | 2 files changed, 2 insertions(+), 2 deletions(-) [+] |
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--- a/data_manager/fetch_refseq.xml Thu Nov 28 20:30:26 2019 +0000 +++ b/data_manager/fetch_refseq.xml Sun Apr 19 18:43:18 2020 +0000 @@ -1,4 +1,4 @@ -<tool id="data_manager_fetch_refseq" name="RefSeq data manager" version="0.0.19" tool_type="manage_data" profile="19.05"> +<tool id="data_manager_fetch_refseq" name="RefSeq data manager" version="0.0.20" tool_type="manage_data" profile="19.05"> <description>Fetch FASTA data from NCBI RefSeq and update all_fasta data table</description> <requirements> <requirement type="package" version="3.7">python</requirement>
--- a/data_manager_conf.xml Thu Nov 28 20:30:26 2019 +0000 +++ b/data_manager_conf.xml Sun Apr 19 18:43:18 2020 +0000 @@ -11,7 +11,7 @@ <source>${path}</source> <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">refseq/#echo str($dbkey).split('.')[1]#/${value}.fasta</target> </move> - <value_translation>refseq/#echo str($dbkey).split('.')[1]#/${value}.fasta</value_translation> + <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/refseq/#echo str($dbkey).split('.')[1]#/${value}.fasta</value_translation> <value_translation type="function">abspath</value_translation> </column> </output>