comparison data_manager/data_manager.py @ 2:5b1215d19c64 draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_fetch_busco/ commit 02d2967f77e3fa5a18aea63dc84aa9ab418dc165"

1:a7e1e2b008d3

    data_manager_entry = {}
    data_manager_entry['value'] = args.name.lower()
    data_manager_entry['name'] = args.name
    data_manager_entry['path'] = '.'
    data_manager_json = dict(data_tables=dict(busco=data_manager_entry))
    params = json.loads(open(args.output).read())
    target_directory = params['output_data'][0]['extra_files_path']
    os.mkdir(target_directory)
    output_path = os.path.abspath(os.path.join(os.getcwd(), 'busco'))
    for filename in os.listdir(workdir):
        shutil.move(os.path.join(output_path, filename), target_directory)
    with open(args.output, 'w') as out:
        out.write(json.dumps(data_manager_json, sort_keys=True))


if __name__ == '__main__':
    parser = argparse.ArgumentParser(description='Create data manager json.')
    parser.add_argument('--out', dest='output', action='store', help='JSON filename')

2:5b1215d19c64

    data_manager_entry = {}
    data_manager_entry['value'] = args.name.lower()
    data_manager_entry['name'] = args.name
    data_manager_entry['path'] = '.'
    data_manager_json = dict(data_tables=dict(busco=data_manager_entry))
    with open(args.output) as fh:
        params = json.load(fh)
    target_directory = params['output_data'][0]['extra_files_path']
    os.mkdir(target_directory)
    output_path = os.path.abspath(os.path.join(os.getcwd(), 'busco'))
    for filename in os.listdir(workdir):
        shutil.move(os.path.join(output_path, filename), target_directory)
    with open(args.output, 'w') as fh:
        json.dump(data_manager_json, fh, sort_keys=True)


if __name__ == '__main__':
    parser = argparse.ArgumentParser(description='Create data manager json.')
    parser.add_argument('--out', dest='output', action='store', help='JSON filename')