Mercurial > repos > iuc > data_manager_celltypist_models
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_celltypist_models commit c2ec745fbeb5e03e8c4e111c87c85823ebe08b43
| author | iuc |
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| date | Tue, 10 Mar 2026 20:01:24 +0000 |
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Immune_All_Low_v1 immune sub-populations combined from 20 tissues of 18 studies (v1) 2022-07-16 00:20:42.927778 /home/videmp/projects/galaxy/galaxy-dev/tool-data/celltypist Immune_All_Low_v2 immune sub-populations combined from 20 tissues of 18 studies (v2) 2022-07-16 00:20:42.927778 /home/videmp/projects/galaxy/galaxy-dev/tool-data/celltypist Immune_All_High_v2 immune populations combined from 20 tissues of 18 studies (v2) 2022-07-16 08:53:00.959521 /home/videmp/projects/galaxy/galaxy-dev/tool-data/celltypist Adult_COVID19_PBMC_v1 peripheral blood mononuclear cell types from COVID-19 patients and healthy controls (v1) 2024-06-24 19:37:48.634397 /home/videmp/projects/galaxy/galaxy-dev/tool-data/celltypist Adult_CynomolgusMacaque_Hippocampus_v1 cell types from the hippocampus of adult cynomolgus monkeys (Macaca fascicularis) (v1) 2023-07-15 19:44:09.541019 /home/videmp/projects/galaxy/galaxy-dev/tool-data/celltypist Adult_Human_MTG_v1 cell types and subtypes (10x-based) from the adult human middle temporal gyrus (v1) 2024-09-05 12:16:32.271311 /home/videmp/projects/galaxy/galaxy-dev/tool-data/celltypist Adult_Human_PancreaticIslet_v1 cell types from pancreatic islets of healthy adult humans (v1) 2023-09-15 12:01:27.068556 /home/videmp/projects/galaxy/galaxy-dev/tool-data/celltypist Adult_Human_PrefrontalCortex_v1 cell types and subtypes from the adult human dorsolateral prefrontal cortex (v1) 2024-09-05 11:40:55.636137 /home/videmp/projects/galaxy/galaxy-dev/tool-data/celltypist Adult_Human_Skin_v1 cell types from human healthy adult skin (v1) 2023-09-22 18:13:10.902604 /home/videmp/projects/galaxy/galaxy-dev/tool-data/celltypist Adult_Human_Vascular_v1 vascular populations combined from multiple adult human organs (v1) 2024-12-19 16:51:45.315630 /home/videmp/projects/galaxy/galaxy-dev/tool-data/celltypist Adult_Mouse_Gut_v2 cell types in the adult mouse gut combined from eight datasets (v2) 2022-08-08 05:26:50.850176 /home/videmp/projects/galaxy/galaxy-dev/tool-data/celltypist Adult_Mouse_OlfactoryBulb_v1 cell types from the olfactory bulb of adult mice (v1) 2023-07-22 22:13:33.861503 /home/videmp/projects/galaxy/galaxy-dev/tool-data/celltypist Adult_Pig_Hippocampus_v1 cell types from the adult pig hippocampus (v1) 2023-07-14 21:40:10.051325 /home/videmp/projects/galaxy/galaxy-dev/tool-data/celltypist Adult_RhesusMacaque_Hippocampus_v1 cell types from the hippocampus of adult rhesus monkeys (Macaca mulatta) (v1) 2023-07-14 21:47:21.380795 /home/videmp/projects/galaxy/galaxy-dev/tool-data/celltypist Adult_cHSPCs_Illumina_v1 human circulating hematopoietic stem and progenitor cell types in aging, cytopenia, and myelodysplastic syndrome (Illumina) (v1) 2025-09-10 17:01:11.664746 /home/videmp/projects/galaxy/galaxy-dev/tool-data/celltypist Adult_cHSPCs_Ultima_v1 human circulating hematopoietic stem and progenitor cell types in aging, cytopenia, and myelodysplastic syndrome (Ultima) (v1) 2025-09-10 15:52:19.243991 /home/videmp/projects/galaxy/galaxy-dev/tool-data/celltypist Autopsy_COVID19_Lung_v1 cell types from the lungs of 16 SARS-CoV-2 infected COVID-19 autopsy adult donors (v1) 2022-11-19 12:00:00.583922 /home/videmp/projects/galaxy/galaxy-dev/tool-data/celltypist COVID19_HumanChallenge_Blood_v1 detailed blood cell states from 16 individuals after being challenged with SARS-CoV-2 (v1) 2022-09-29 17:40:05.907115 /home/videmp/projects/galaxy/galaxy-dev/tool-data/celltypist COVID19_Immune_Landscape_v1 immune subtypes from lung and blood of COVID-19 patients and healthy controls (v1) 2022-04-08 02:01:02.730893 /home/videmp/projects/galaxy/galaxy-dev/tool-data/celltypist Cells_Adult_Breast_v1 cell types from the adult human breast (v1) 2024-04-20 21:09:27.948338 /home/videmp/projects/galaxy/galaxy-dev/tool-data/celltypist Cells_Fetal_Lung_v2 cell types from human embryonic and fetal lungs (v2) 2022-10-15 13:54:37.427721 /home/videmp/projects/galaxy/galaxy-dev/tool-data/celltypist Cells_Human_Tonsil_v1 tonsillar cell types from humans (3-65 years) (v1) 2024-04-21 17:50:57.165795 /home/videmp/projects/galaxy/galaxy-dev/tool-data/celltypist Cells_Intestinal_Tract_v1 intestinal cells from fetal, pediatric (healthy and Crohn's disease) and adult human gut (v1) 2021-12-17 17:15:04.575098 /home/videmp/projects/galaxy/galaxy-dev/tool-data/celltypist Cells_Lung_Airway_v4 cell populations from scRNA-seq of five locations of the human lungs and airways (v4) 2022-09-26 20:32:26.712486 /home/videmp/projects/galaxy/galaxy-dev/tool-data/celltypist Developing_Human_Brain_v1 cell types from the first-trimester developing human brain (v1) 2022-10-29 21:02:53.713593 /home/videmp/projects/galaxy/galaxy-dev/tool-data/celltypist Developing_Human_Gonads_v1 cell types of human gonadal and adjacent extragonadal tissue from the first and second trimesters of gestation (v1) 2023-09-16 02:07:24.874009 /home/videmp/projects/galaxy/galaxy-dev/tool-data/celltypist Developing_Human_Hippocampus_v1 cell types from the developing human hippocampus (v1) 2023-07-18 09:28:10.712405 /home/videmp/projects/galaxy/galaxy-dev/tool-data/celltypist Developing_Human_Organs_v1 cell types of five endoderm-derived organs in developing humans from 7–21 post-conception weeks (v1) 2023-09-17 13:47:50.974219 /home/videmp/projects/galaxy/galaxy-dev/tool-data/celltypist Developing_Human_Thymus_v1 cell populations in embryonic, fetal, pediatric, and adult stages of the human thymus (v1) 2022-12-01 02:50:48.767817 /home/videmp/projects/galaxy/galaxy-dev/tool-data/celltypist Developing_Mouse_Brain_v1 cell types from the embryonic mouse brain between gastrulation and birth (v1) 2022-01-25 09:00:56.249989 /home/videmp/projects/galaxy/galaxy-dev/tool-data/celltypist Developing_Mouse_Hippocampus_v1 cell types from the mouse hippocampus at postnatal day 7 (v1) 2023-07-18 22:51:57.960310 /home/videmp/projects/galaxy/galaxy-dev/tool-data/celltypist Fetal_Human_AdrenalGlands_v1 cell types of human fetal adrenal glands from 8 to 14 post-conceptional weeks (v1) 2023-09-17 10:03:32.274480 /home/videmp/projects/galaxy/galaxy-dev/tool-data/celltypist Fetal_Human_Pancreas_v1 pancreatic cell types from human embryos at 9-19 weeks post conception (v1) 2023-09-17 16:29:53.752285 /home/videmp/projects/galaxy/galaxy-dev/tool-data/celltypist Fetal_Human_Pituitary_v1 cell types of human fetal pituitaries from 7 to 25 weeks postfertilization (v1) 2023-09-17 11:06:13.979445 /home/videmp/projects/galaxy/galaxy-dev/tool-data/celltypist Fetal_Human_Retina_v1 cell types from human fetal neural retina and retinal pigment epithelium (v1) 2023-09-17 09:17:11.379366 /home/videmp/projects/galaxy/galaxy-dev/tool-data/celltypist Fetal_Human_Skin_v1 cell types from developing human fetal skin (v1) 2023-09-20 19:14:33.808090 /home/videmp/projects/galaxy/galaxy-dev/tool-data/celltypist Healthy_Adult_Heart_v1 cell types from eight anatomical regions of the healthy adult human heart (v1) 2023-02-27 16:03:27.613149 /home/videmp/projects/galaxy/galaxy-dev/tool-data/celltypist Healthy_COVID19_PBMC_v1 peripheral blood mononuclear cell types from healthy and COVID-19 individuals (v1) 2022-03-10 05:08:08.224597 /home/videmp/projects/galaxy/galaxy-dev/tool-data/celltypist Healthy_Human_Liver_v1 cell types from scRNA-seq and snRNA-seq of the adult human liver (v1) 2023-09-14 12:48:54.179790 /home/videmp/projects/galaxy/galaxy-dev/tool-data/celltypist Healthy_Mouse_Liver_v1 cell types from scRNA-seq and snRNA-seq of the healthy murine liver (v1) 2023-07-28 12:16:49.675179 /home/videmp/projects/galaxy/galaxy-dev/tool-data/celltypist Human_AdultAged_Hippocampus_v1 cell types from the hippocampus of adult and aged humans (v1) 2023-07-16 10:03:59.893289 /home/videmp/projects/galaxy/galaxy-dev/tool-data/celltypist Human_Colorectal_Cancer_v1 cell types of colon tissues from patients with colorectal cancer (v1) 2024-04-26 20:47:44.844844 /home/videmp/projects/galaxy/galaxy-dev/tool-data/celltypist Human_Developmental_Retina_v1 cell types from human fetal retina (v1) 2023-09-17 20:42:25.314063 /home/videmp/projects/galaxy/galaxy-dev/tool-data/celltypist Human_Embryonic_YolkSac_v1 cell types of the human yolk sac from 4-8 post-conception weeks (v1) 2023-09-14 17:32:58.768364 /home/videmp/projects/galaxy/galaxy-dev/tool-data/celltypist Human_Endometrium_Atlas_v1 endometrial cell types integrated from seven datasets across the menstrual cycle (v1) 2025-01-09 15:43:11.091556 /home/videmp/projects/galaxy/galaxy-dev/tool-data/celltypist Human_IPF_Lung_v1 cell types from idiopathic pulmonary fibrosis, chronic obstructive pulmonary disease, and healthy lungs of adult humans (v1) 2022-11-16 03:08:53.630039 /home/videmp/projects/galaxy/galaxy-dev/tool-data/celltypist Human_Longitudinal_Hippocampus_v1 cell types from the adult human anterior and posterior hippocampus (v1) 2023-07-14 12:59:10.144650 /home/videmp/projects/galaxy/galaxy-dev/tool-data/celltypist Human_Lung_Atlas_v2 integrated Human Lung Cell Atlas (HLCA) combining multiple datasets of the healthy respiratory system (v2) 2023-05-17 19:51:55.661237 /home/videmp/projects/galaxy/galaxy-dev/tool-data/celltypist Human_PF_Lung_v1 cell types from different forms of pulmonary fibrosis lungs of adult humans (v1) 2022-11-16 11:53:12.984520 /home/videmp/projects/galaxy/galaxy-dev/tool-data/celltypist Human_Placenta_Decidua_v1 cell types from first-trimester human placentas with matched maternal blood and decidua (v1) 2024-06-24 12:24:39.703109 /home/videmp/projects/galaxy/galaxy-dev/tool-data/celltypist Lethal_COVID19_Lung_v1 cell types from the lungs of individuals who died of COVID-19 and control individuals (v1) 2022-11-16 15:38:16.170461 /home/videmp/projects/galaxy/galaxy-dev/tool-data/celltypist Mouse_Dendritic_Subtypes_v1 dendritic cell subtypes integrated from 9 datasets across murine spleen, bone marrow, blood, and lung tissue (v1) 2025-08-12 18:05:20.370475 /home/videmp/projects/galaxy/galaxy-dev/tool-data/celltypist Mouse_Dentate_Gyrus_v1 cell types from the dentate gyrus in perinatal, juvenile, and adult mice (v1) 2023-07-14 20:03:58.410321 /home/videmp/projects/galaxy/galaxy-dev/tool-data/celltypist Mouse_Isocortex_Hippocampus_v1 cell types from the adult mouse isocortex (neocortex) and hippocampal formation (v1) 2023-07-16 14:42:07.696736 /home/videmp/projects/galaxy/galaxy-dev/tool-data/celltypist Mouse_Postnatal_DentateGyrus_v1 cell types from the mouse dentate gyrus in postnatal days 12-35 (v1) 2023-07-21 23:03:32.480446 /home/videmp/projects/galaxy/galaxy-dev/tool-data/celltypist Mouse_Whole_Brain_v1 cell types from the whole adult mouse brain (v1) 2024-04-30 17:19:37.721313 /home/videmp/projects/galaxy/galaxy-dev/tool-data/celltypist Nuclei_Human_InnerEar_v1 cell types from human inner ear at fetal age weeks 7.5 and 9.2 as well as adult (v1) 2025-12-02 22:12:13.925426 /home/videmp/projects/galaxy/galaxy-dev/tool-data/celltypist Nuclei_Lung_Airway_v4 cell populations from snRNA-seq of five locations of the human lungs and airways (v4) 2022-09-27 01:30:38.635174 /home/videmp/projects/galaxy/galaxy-dev/tool-data/celltypist PaediatricAdult_COVID19_Airway_v1 cell types in the airway of paediatric and adult patients with COVID-19 and healthy controls (v1) 2025-10-14 23:14:36.927842 /home/videmp/projects/galaxy/galaxy-dev/tool-data/celltypist PaediatricAdult_COVID19_PBMC_v1 peripheral blood mononuclear cell types of paediatric and adult patients with COVID-19 and healthy controls (v1) 2025-10-15 00:51:41.857714 /home/videmp/projects/galaxy/galaxy-dev/tool-data/celltypist Pan_Fetal_Human_v2 stromal and immune populations from the human fetus (v2) 2022-04-23 11:40:27.484223 /home/videmp/projects/galaxy/galaxy-dev/tool-data/celltypist