Mercurial > repos > iuc > data_manager_bwameth_index_builder

annotate tool-data/bwameth_indexes.loc.sample @ 3:d1c0b1f0c67e draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/data_managers/data_manager_bwameth_index_builder commit 8b77954efb8d46dfb3bec5421819076f3757ad06"
author iuc
date Sun, 26 Jan 2020 14:34:44 +0000
parents fa17303fc8de
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fa17303fc8de planemo upload for repository https://github.com/galaxyproject/tools-iuc/data_managers/data_manager_bwameth_index_builder commit 30192223eeb60f33a42046921351c6ba3c80c90c
iuc
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1 # This is a sample file distributed with Galaxy that is used to define a
fa17303fc8de planemo upload for repository https://github.com/galaxyproject/tools-iuc/data_managers/data_manager_bwameth_index_builder commit 30192223eeb60f33a42046921351c6ba3c80c90c
iuc
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2 # list of bwa-meth indices, using three columns tab separated:
fa17303fc8de planemo upload for repository https://github.com/galaxyproject/tools-iuc/data_managers/data_manager_bwameth_index_builder commit 30192223eeb60f33a42046921351c6ba3c80c90c
iuc
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3 #
fa17303fc8de planemo upload for repository https://github.com/galaxyproject/tools-iuc/data_managers/data_manager_bwameth_index_builder commit 30192223eeb60f33a42046921351c6ba3c80c90c
iuc
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4 # <unique_build_id> <dbkey> <display_name> <genome_fasta_file_path>
fa17303fc8de planemo upload for repository https://github.com/galaxyproject/tools-iuc/data_managers/data_manager_bwameth_index_builder commit 30192223eeb60f33a42046921351c6ba3c80c90c
iuc
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5 #
fa17303fc8de planemo upload for repository https://github.com/galaxyproject/tools-iuc/data_managers/data_manager_bwameth_index_builder commit 30192223eeb60f33a42046921351c6ba3c80c90c
iuc
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6 # An index can be created with the following command:
fa17303fc8de planemo upload for repository https://github.com/galaxyproject/tools-iuc/data_managers/data_manager_bwameth_index_builder commit 30192223eeb60f33a42046921351c6ba3c80c90c
iuc
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7 #
fa17303fc8de planemo upload for repository https://github.com/galaxyproject/tools-iuc/data_managers/data_manager_bwameth_index_builder commit 30192223eeb60f33a42046921351c6ba3c80c90c
iuc
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8 # bwameth.py index /some/path/genome.fa
fa17303fc8de planemo upload for repository https://github.com/galaxyproject/tools-iuc/data_managers/data_manager_bwameth_index_builder commit 30192223eeb60f33a42046921351c6ba3c80c90c
iuc
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9 #
fa17303fc8de planemo upload for repository https://github.com/galaxyproject/tools-iuc/data_managers/data_manager_bwameth_index_builder commit 30192223eeb60f33a42046921351c6ba3c80c90c
iuc
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10 # "/some/path/genome.fa" would then be the last column in the line
fa17303fc8de planemo upload for repository https://github.com/galaxyproject/tools-iuc/data_managers/data_manager_bwameth_index_builder commit 30192223eeb60f33a42046921351c6ba3c80c90c
iuc
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11 # If this were for the mm10 mouse genome, the resulting entry would look like:
fa17303fc8de planemo upload for repository https://github.com/galaxyproject/tools-iuc/data_managers/data_manager_bwameth_index_builder commit 30192223eeb60f33a42046921351c6ba3c80c90c
iuc
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12 #
fa17303fc8de planemo upload for repository https://github.com/galaxyproject/tools-iuc/data_managers/data_manager_bwameth_index_builder commit 30192223eeb60f33a42046921351c6ba3c80c90c
iuc
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13 #mm9 mm9 Mouse (mm9) /some/path/genome.fa
fa17303fc8de planemo upload for repository https://github.com/galaxyproject/tools-iuc/data_managers/data_manager_bwameth_index_builder commit 30192223eeb60f33a42046921351c6ba3c80c90c
iuc
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14 #
fa17303fc8de planemo upload for repository https://github.com/galaxyproject/tools-iuc/data_managers/data_manager_bwameth_index_builder commit 30192223eeb60f33a42046921351c6ba3c80c90c
iuc
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15 #