# HG changeset patch # User iuc # Date 1575586664 0 # Node ID adb016654604dcc71623afd862400787fa4074cc # Parent 923d45f161cfa6f7d7ac3d50a7aed86a5aea50fc "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/dada2 commit a82e4981dac025c909244acd7127c215bdb519a7" diff -r 923d45f161cf -r adb016654604 README.md --- a/README.md Fri Nov 08 18:46:09 2019 -0500 +++ b/README.md Thu Dec 05 22:57:44 2019 +0000 @@ -1,15 +1,21 @@ Wrappers for the core functionality of the dada2 package https://benjjneb.github.io/dada2/index.html. +- assignTaxonomyAddspecies - filterAndTrim - learnErrors - dada - mergePairs - makeSequenceTable +- plotComplexity +- plotQualityProfile - removeBimeraDenovo +- seqCounts Installation ============ +A conda release >=4.6 is needed so that the bioconductor-dada2 conda environment can be installed correctly. + The dada2 wrappers can be installed via the toolshed. Since they use datatypes that have been introduced with Galaxy release 19.09 they won't work out of the box for older Galaxy releases. In order to run the tools you may either upgrade Galaxy or execute the following two steps: diff -r 923d45f161cf -r adb016654604 macros.xml --- a/macros.xml Fri Nov 08 18:46:09 2019 -0500 +++ b/macros.xml Thu Dec 05 22:57:44 2019 +0000 @@ -8,7 +8,7 @@ 1.12 - 0 + 1