Mercurial > repos > iuc > cwpair2

comparison cwpair2.xml @ 2:d856e96b8ce2 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cwpair2 commit ea49259a702be2cc2b70166770d09177019bb210
author iuc
date Wed, 11 May 2016 04:00:46 -0400
parents dd727dec864f
children 6109a90ab0d6
comparison
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1:dd727dec864f 2:d856e96b8ce2
83 <param name="threshold_format" value="relative_threshold" /> 83 <param name="threshold_format" value="relative_threshold" />
84 <param name="relative_threshold" value="0.0" /> 84 <param name="relative_threshold" value="0.0" />
85 <param name="output_files" value="matched_pair" /> 85 <param name="output_files" value="matched_pair" />
86 <output name="statistics_output" file="statistics1.tabular" ftype="tabular" /> 86 <output name="statistics_output" file="statistics1.tabular" ftype="tabular" />
87 <output_collection name="MP" type="list"> 87 <output_collection name="MP" type="list">
88 <element name="f0u25d100_on_data_1" file="closest_mp_output1.gff" ftype="gff" compare="contains"/> 88 <element name="data_MP_closest_f0u25d100_on_data_1.gff" file="closest_mp_output1.gff" ftype="gff" compare="contains"/>
89 <element name="f0u25d100_on_data_1" file="largest_mp_output1.gff" ftype="gff" compare="contains"/> 89 <element name="data_MP_largest_f0u25d100_on_data_1.gff" file="largest_mp_output1.gff" ftype="gff" compare="contains"/>
90 <element name="f0u25d100_on_data_1" file="mode_mp_output1.gff" ftype="gff" compare="contains"/> 90 <element name="data_MP_mode_f0u25d100_on_data_1.gff" file="mode_mp_output1.gff" ftype="gff" compare="contains"/>
91 </output_collection> 91 </output_collection>
92 </test> 92 </test>
93 <test> 93 <test>
94 <param name="input" value="cwpair2_input1.gff" /> 94 <param name="input" value="cwpair2_input1.gff" />
95 <param name="up_distance" value="50" /> 95 <param name="up_distance" value="50" />
99 <param name="threshold_format" value="relative_threshold" /> 99 <param name="threshold_format" value="relative_threshold" />
100 <param name="relative_threshold" value="0.0" /> 100 <param name="relative_threshold" value="0.0" />
101 <param name="output_files" value="all" /> 101 <param name="output_files" value="all" />
102 <output name="statistics_output" file="statistics2.tabular" ftype="tabular" /> 102 <output name="statistics_output" file="statistics2.tabular" ftype="tabular" />
103 <output_collection name="H" type="list"> 103 <output_collection name="H" type="list">
104 <element name="histogram_C_mode_f0u50d100_on_data_1" file="mode_c_output2.pdf" ftype="pdf" compare="contains" lines_diff="12"/> 104 <element name="histogram_C_mode_f0u50d100_on_data_1.pdf" file="magic.pdf" ftype="pdf" compare="contains" />
105 <element name="histogram_F_closest_f0u50d100_on_data_1" file="closest_f_output2.pdf" ftype="pdf" compare="contains" lines_diff="12"/> 105 <element name="histogram_F_closest_f0u50d100_on_data_1.pdf" file="magic.pdf" ftype="pdf" compare="contains" />
106 <element name="histogram_F_largest_f0u50d100_on_data_1" file="largest_f_output2.pdf" ftype="pdf" compare="contains" lines_diff="12"/> 106 <element name="histogram_F_largest_f0u50d100_on_data_1.pdf" file="magic.pdf" ftype="pdf" compare="contains" />
107 <element name="histogram_F_mode_f0u50d100_on_data_1" file="mode_f_output2.pdf" ftype="pdf" compare="contains" lines_diff="12"/> 107 <element name="histogram_F_mode_f0u50d100_on_data_1.pdf" file="magic.pdf" ftype="pdf" compare="contains" />
108 <element name="histogram_P_mode_f0u50d100_on_data_1" file="mode_p_output2.pdf" ftype="pdf" compare="contains" lines_diff="12"/> 108 <element name="histogram_P_mode_f0u50d100_on_data_1.pdf" file="magic.pdf" ftype="pdf" compare="contains" />
109 </output_collection> 109 </output_collection>
110 <output_collection name="D" type="list"> 110 <output_collection name="D" type="list">
111 <element name="data_D_closest_f0u50d100_on_data_1" file="closest_d_output2.tabular" ftype="tabular" compare="comntains"/> 111 <element name="data_D_closest_f0u50d100_on_data_1.tabular" file="closest_d_output2.tabular" ftype="tabular" compare="contains"/>
112 <element name="data_D_largest_f0u50d100_on_data_1" file="largest_d_output2.tabular" ftype="tabular" compare="contains"/> 112 <element name="data_D_largest_f0u50d100_on_data_1.tabular" file="largest_d_output2.tabular" ftype="tabular" compare="contains"/>
113 <element name="data_D_mode_f0u50d100_on_data_1" file="mode_d_output2.tabular" ftype="tabular" compare="contains"/> 113 <element name="data_D_mode_f0u50d100_on_data_1.tabular" file="mode_d_output2.tabular" ftype="tabular" compare="contains"/>
114 </output_collection> 114 </output_collection>
115 <output_collection name="O" type="list"> 115 <output_collection name="O" type="list">
116 <element name="data_O_closest_f0u50d100_on_data_1" file="closest_o_output2.tabular" ftype="tabular" compare="contains"/> 116 <element name="data_O_closest_f0u50d100_on_data_1.tabular" file="closest_o_output2.tabular" ftype="tabular" compare="contains"/>
117 <element name="data_O_largest_f0u50d100_on_data_1" file="largest_o_output2.tabular" ftype="tabular" compare="contains"/> 117 <element name="data_O_largest_f0u50d100_on_data_1.tabular" file="largest_o_output2.tabular" ftype="tabular" compare="contains"/>
118 <element name="data_O_mode_f0u50d100_on_data_1" file="mode_o_output2.tabular" ftype="tabular" compare="contains"/> 118 <element name="data_O_mode_f0u50d100_on_data_1.tabular" file="mode_o_output2.tabular" ftype="tabular" compare="contains"/>
119 </output_collection> 119 </output_collection>
120 <output_collection name="MP" type="list"> 120 <output_collection name="MP" type="list">
121 <element name="data_MP_closest_f0u50d100_on_data_1" file="closest_mp_output2.gff" ftype="gff" compare="contains"/> 121 <element name="data_MP_closest_f0u50d100_on_data_1.gff" file="closest_mp_output2.gff" ftype="gff" compare="contains"/>
122 <element name="data_MP_largest_f0u50d100_on_data_1" file="largest_mp_output2.gff" ftype="gff" compare="contains"/> 122 <element name="data_MP_largest_f0u50d100_on_data_1.gff" file="largest_mp_output2.gff" ftype="gff" compare="contains"/>
123 <element name="data_MP_mode_f0u50d100_on_data_1" file="mode_mp_output2.gff" ftype="gff" compare="contains"/> 123 <element name="data_MP_mode_f0u50d100_on_data_1.gff" file="mode_mp_output2.gff" ftype="gff" compare="contains"/>
124 </output_collection> 124 </output_collection>
125 </test> 125 </test>
126 </tests> 126 </tests>
127 <help> 127 <help>
128 **What it does** 128 **What it does**