# HG changeset patch
# User iuc
# Date 1642652808 0
# Node ID c1a0f42d6c2a26b47a42ad6a4636b799c78d97ee
# Parent cafcf7eecf443c0d8ca341174f6311f107aef12a
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/crossmap commit e10d34b547557b2bd4f0be69e31204bd5703e422"
diff -r cafcf7eecf44 -r c1a0f42d6c2a macros.xml
--- a/macros.xml Thu Jul 15 16:14:15 2021 +0000
+++ b/macros.xml Thu Jan 20 04:26:48 2022 +0000
@@ -6,7 +6,7 @@
- 0.5.2
+ 0.6.1
0
diff -r cafcf7eecf44 -r c1a0f42d6c2a test-data/test_bam_01_output_a.bam
Binary file test-data/test_bam_01_output_a.bam has changed
diff -r cafcf7eecf44 -r c1a0f42d6c2a test-data/test_bed_02_input_a.bed
--- a/test-data/test_bed_02_input_a.bed Thu Jul 15 16:14:15 2021 +0000
+++ b/test-data/test_bed_02_input_a.bed Thu Jan 20 04:26:48 2022 +0000
@@ -1,5 +1,5 @@
-chr1 100 10000
-chr2 100 10000
-chr3 100 10000
-chr4 8941700 8947200
-chr5 1 100000000
\ No newline at end of file
+1 100 10000
+2 100 10000
+3 100 10000
+4 8941700 8947200
+5 1 100000000
diff -r cafcf7eecf44 -r c1a0f42d6c2a test-data/test_bed_02_output_a__all.bed
--- a/test-data/test_bed_02_output_a__all.bed Thu Jul 15 16:14:15 2021 +0000
+++ b/test-data/test_bed_02_output_a__all.bed Thu Jan 20 04:26:48 2022 +0000
@@ -1,5 +1,5 @@
-chr1 100 10000 Unmap
-chr2 100 10000 Unmap
-chr3 100 10000 Unmap
-chr4 8941700 8947200 Unmap
-chr5 1 100000000 Unmap
+1 100 10000 Unmap
+2 100 10000 Unmap
+3 100 10000 Unmap
+4 8941700 8947200 Unmap
+5 1 100000000 Unmap
diff -r cafcf7eecf44 -r c1a0f42d6c2a test-data/test_bed_02_output_a__only_fails.bed
--- a/test-data/test_bed_02_output_a__only_fails.bed Thu Jul 15 16:14:15 2021 +0000
+++ b/test-data/test_bed_02_output_a__only_fails.bed Thu Jan 20 04:26:48 2022 +0000
@@ -1,5 +1,5 @@
-chr1 100 10000 Unmap
-chr2 100 10000 Unmap
-chr3 100 10000 Unmap
-chr4 8941700 8947200 Unmap
-chr5 1 100000000 Unmap
+1 100 10000 Unmap
+2 100 10000 Unmap
+3 100 10000 Unmap
+4 8941700 8947200 Unmap
+5 1 100000000 Unmap
diff -r cafcf7eecf44 -r c1a0f42d6c2a test-data/test_vcf_01_input.vcf
--- a/test-data/test_vcf_01_input.vcf Thu Jul 15 16:14:15 2021 +0000
+++ b/test-data/test_vcf_01_input.vcf Thu Jan 20 04:26:48 2022 +0000
@@ -2,6 +2,7 @@
##FORMAT=
##FORMAT=
##FORMAT=
+##contig=
#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT SAMP001 SAMP002
1 10 rs11449 G A . PASS . GT 0/0 0/1
1 100 rs84825 C C . PASS . GT:GP 0/1:. 0/1:0.03,0.97,0
diff -r cafcf7eecf44 -r c1a0f42d6c2a test-data/test_vcf_01_output.vcf.unmap
--- a/test-data/test_vcf_01_output.vcf.unmap Thu Jul 15 16:14:15 2021 +0000
+++ b/test-data/test_vcf_01_output.vcf.unmap Thu Jan 20 04:26:48 2022 +0000
@@ -2,5 +2,6 @@
##FORMAT=
##FORMAT=
##FORMAT=
+##contig=
#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT SAMP001 SAMP002
1 200 rs84823 T G . PASS . GT:PL ./.:. 1/1:10,5,0 Fail(REF==ALT)