# HG changeset patch
# User iuc
# Date 1527203303 14400
# Node ID bbd9d5b629f2a525c77baff0a491ad065fcc98f5
# Parent  d3051afe9a38e9543fbcedcff7f681f532d05098
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/crossmap commit 23fab16cd40acbd5b0e9d640ed3858040db7a622

diff -r d3051afe9a38 -r bbd9d5b629f2 crossmap_bigwig.xml
--- a/crossmap_bigwig.xml	Fri Oct 20 11:31:34 2017 -0400
+++ b/crossmap_bigwig.xml	Thu May 24 19:08:23 2018 -0400
@@ -1,4 +1,4 @@
-<tool id="crossmap_bw" name="CrossMap BigWig" version="@WRAPPER_VERSION@-0">
+<tool id="crossmap_bw" name="CrossMap BigWig" version="@WRAPPER_VERSION@">
     <description>Convert genome coordinates or annotation files between genome assemblies</description>
     <macros>
         <import>macros.xml</import>
@@ -11,9 +11,7 @@
 CrossMap.py bigwig
 '${chain_source.input_chain}'
 '${input}'
-'${output}'
-
-&& mv '${output}.bw' '${output}'
+output
     ]]></command>
 
     <inputs>
@@ -23,7 +21,7 @@
     </inputs>
 
     <outputs>
-        <data name="output" format="bigwig" label="${tool.name} on ${on_string}" />
+        <data name="output" format="bigwig" label="${tool.name} on ${on_string}" from_work_dir="output.bw" />
     </outputs>
 
     <tests>
@@ -54,7 +52,6 @@
 wigToBigWig tool. We export files in bedGraph because it is usually much
 smaller than file in wiggle format, and more importantly, CrossMap
 internally transforms wiggle into bedGraph to increase running speed.
-
     ]]></help>
 
     <citations>
diff -r d3051afe9a38 -r bbd9d5b629f2 macros.xml
--- a/macros.xml	Fri Oct 20 11:31:34 2017 -0400
+++ b/macros.xml	Thu May 24 19:08:23 2018 -0400
@@ -2,11 +2,11 @@
 <macros>
     <xml name="requirements">
         <requirements>
-            <requirement type="package" version="0.2.5">crossmap</requirement>
+            <requirement type="package" version="0.2.7">crossmap</requirement>
             <yield/>
         </requirements>
     </xml>
-    <token name="@WRAPPER_VERSION@">0.2.5</token>
+    <token name="@WRAPPER_VERSION@">0.2.7</token>
     <xml name="stdio">
         <stdio>
             <regex match="Aborted (core dumped)" source="stdout" level="fatal"/>