Mercurial > repos > iuc > cooc_mutbamscan
comparison test-data/omicron_ba1_mutations.yaml @ 0:90d4dfb2d266 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cojac commit 38ed91999d4bbe3bedc294197926ea332eb6cd5e
| author | iuc |
|---|---|
| date | Thu, 11 Aug 2022 13:48:28 +0000 |
| parents | |
| children |
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| -1:000000000000 | 0:90d4dfb2d266 |
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| 1 variant: | |
| 2 voc: VOC-21NOV-01 | |
| 3 pheuid: pentagon-refining | |
| 4 short: om1 | |
| 5 pangolin: BA.1 | |
| 6 source: | |
| 7 - https://github.com/cov-lineages/pango-designation/issues/343 | |
| 8 threshold: 10 | |
| 9 mut: | |
| 10 # ORF1ab | |
| 11 2832: 'A>G' # nsp3:K38R | |
| 12 5386: 'T>G' # syn nsp3 | |
| 13 8393: 'G>A' # nsp3:A1892T | |
| 14 11537: 'A>G' # nsp6:I189V | |
| 15 13195: 'T>C' # syn nsp10 | |
| 16 18163: 'A>G' # nsp14:I42V | |
| 17 # S | |
| 18 22679: 'T>C' # surface glycoprotein:S373P | |
| 19 22898: 'G>A' # surface glycoprotein:G446S | |
| 20 23048: 'G>A' # surface glycoprotein:G496S | |
| 21 23202: 'C>A' # surface glycoprotein:T547K | |
| 22 23599: 'T>G' # surface glycoprotein:N679K | |
| 23 24130: 'C>A' # surface glycoprotein:N856K | |
| 24 24469: 'T>A' # surface glycoprotein:N969K | |
| 25 24503: 'C>T' # surface glycoprotein:L981F | |
| 26 # M | |
| 27 26530: 'A>G' # membrane glycoprotein:D3G | |
| 28 26577: 'C>G' # membrane glycoprotein:Q19E | |
| 29 # ORF6 | |
| 30 27259: 'A>C' # syn ORF6 protein |