Mercurial > repos > iuc > concoct
diff concoct.xml @ 6:337ba922753a draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/concoct commit 6bcf71ac8fae2a84117069dc00b3c4cac6d20fa5
author | iuc |
---|---|
date | Sat, 26 Aug 2023 02:41:24 +0000 |
parents | d9600883e676 |
children |
line wrap: on
line diff
--- a/concoct.xml Wed Aug 03 13:53:59 2022 +0000 +++ b/concoct.xml Sat Aug 26 02:41:24 2023 +0000 @@ -38,7 +38,7 @@ <param argument="--kmer_length" type="integer" min="0" value="4" label="Kmer length"/> <param argument="--length_threshold" type="integer" min="0" value="1000" label="Sequence length threshold" help="Contigs shorter than this value will not be included"/> <param argument="--read_length" type="integer" min="0" value="100" label="Read length for coverage"/> - <param argument="--total_percentage_pca" type="integer" min="0" value="100" label="Percentage of variance explained by the principal components for the combined data"/> + <param argument="--total_percentage_pca" type="integer" min="0" value="90" label="Percentage of variance explained by the principal components for the combined data"/> <param argument="--seed" type="integer" min="0" value="1" label="Seed for clustering" help="Zero value will use random seed"/> <param argument="--iterations" type="integer" min="0" value="500" label="Maximum number of iterations for the Variational Bayes Gaussian Mixture Models (VBGMM)"/> <param argument="--no_cov_normalization" type="boolean" truevalue="--no_cov_normalization" falsevalue="" checked="false" label="Skip normalization and only do log transorm of the coverage?" help="By default, the coverage is normalized for samples, then normalized for contigs and finally log transformed. By setting this flag you skip the normalization and only do log transorm of the coverage."/> @@ -90,7 +90,7 @@ </output> <output name="output_pca_transformed" ftype="csv"> <assert_contents> - <has_size value="834200" delta="10"/> + <has_size value="834200" delta="50"/> <has_text text="contig-21000001"/> </assert_contents> </output> @@ -127,7 +127,7 @@ </output> <output name="output_pca_transformed" ftype="csv"> <assert_contents> - <has_size value="834200" delta="10"/> + <has_size value="834200" delta="50"/> <has_text text="contig-21000001"/> </assert_contents> </output>