Mercurial > repos > iuc > colibread_commet
comparison test-data/discosnp/vcf_file_paired.vcf @ 0:0b9a713ece1d draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/colibread commit a213833526146246d277ec7851165971449b501e
| author | iuc |
|---|---|
| date | Fri, 20 Oct 2017 03:11:50 -0400 |
| parents | |
| children | dc31aacc886b |
comparison
equal
deleted
inserted
replaced
| -1:000000000000 | 0:0b9a713ece1d |
|---|---|
| 1 ##fileformat=VCFv4.1 | |
| 2 ##filedate=2017102 | |
| 3 ##source=VCF_creator | |
| 4 ##SAMPLE=file://discoRes_k_31_c_auto_D_0_P_1_b_0_coherentBWA_MEM.sam | |
| 5 ##REF=<ID=REF,Number=1,Type=String,Description="Allele of the path Disco aligned with the least mismatches"> | |
| 6 ##FILTER=<ID=MULTIPLE,Description="Mapping type : PASS or MULTIPLE or ."> | |
| 7 ##INFO=<ID=Ty,Number=1,Type=String,Description="SNP, INS, DEL or ."> | |
| 8 ##INFO=<ID=Rk,Number=1,Type=Float,Description="SNP rank"> | |
| 9 ##INFO=<ID=UL,Number=1,Type=Integer,Description="length of the unitig left"> | |
| 10 ##INFO=<ID=UR,Number=1,Type=Integer,Description="length of the unitig right"> | |
| 11 ##INFO=<ID=CL,Number=1,Type=Integer,Description="length of the contig left"> | |
| 12 ##INFO=<ID=CR,Number=1,Type=Integer,Description="length of the contig right"> | |
| 13 ##INFO=<ID=Genome,Number=1,Type=String,Description="Allele of the reference;for indel reference is . "> | |
| 14 ##INFO=<ID=Sd,Number=1,Type=Integer,Description="Reverse (-1) or Forward (1) Alignement"> | |
| 15 ##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype"> | |
| 16 ##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Cumulated depth accross samples (sum)"> | |
| 17 ##FORMAT=<ID=PL,Number=G,Type=Integer,Description="Phred-scaled Genotype Likelihoods"> | |
| 18 ##FORMAT=<ID=AD,Number=2,Type=Integer,Description="Depth of each allele by sample"> | |
| 19 ##FORMAT=<ID=HQ,Number=2,Type=Integer,Description="Haplotype Quality"> | |
| 20 #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT G1 | |
| 21 read661_contig0_position139_M0_I0_D0_NG0______er0__indel0__rgeom0_rev0 62 3 C G . MULTIPLE Ty=SNP;Rk=0;UL=.;UR=.;CL=.;CR=.;Genome=C;Sd=1 GT:DP:PL:AD:HQ 0/1:258:1927,18,1727:124,134:0,0 | |
| 22 read780_contig0_position26_M0_I0_D0_NG0______er0__indel0__rgeom0_rev1 43 2 A T . MULTIPLE Ty=SNP;Rk=0;UL=.;UR=.;CL=.;CR=.;Genome=A;Sd=1 GT:DP:PL:AD:HQ 0/1:160:1260,18,1020:74,86:0,0 | |
| 23 read656_contig0_position454_M0_I0_D0_NG0______er0__indel0__rgeom0_rev1 62 1 T A . MULTIPLE Ty=SNP;Rk=0;UL=.;UR=.;CL=.;CR=.;Genome=T;Sd=1 GT:DP:PL:AD:HQ 0/1:224:1628,17,1548:110,114:0,0 |