diff coverage.xml @ 4:2d0e6cfe0d25 draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cnvkit commit fc1282ec68b346988203ead860e9b9d6a47e9efb

--- a/coverage.xml	Mon Jan 20 16:28:02 2025 +0000
+++ b/coverage.xml	Sat Mar 01 11:54:19 2025 +0000
@@ -37,7 +37,7 @@
         <param argument="--min-mapq" optional="true" type="integer" label="Minimum mapping quality score to count a read for coverage depth" min="0" max="60" value="0" help="" />
     </inputs>
     <outputs>
-        <data name="out_capture_target_coverage" format="tabular" label="${tool.name} on ${on_string}: Sample Target coverage" from_work_dir="sample.targetcoverage.cnn" />
+        <data name="out_capture_target_coverage" format="cnn" label="${tool.name} on ${on_string}: Sample Target coverage" from_work_dir="sample.targetcoverage.cnn" />
     </outputs>
     <tests>
         <test expect_num_outputs="1">
@@ -66,6 +66,15 @@
          
          Target and antitarget bin-level coverages (.cnn) output file contains those columns
           chromosome, Start, end, gene, log2 and depth
+
+-----
+
+**Target Coverage File (e.g., sample.targetcoverage.cnn):**
+
+- **Columns:** chromosome, start, end, gene, reads (raw read count), depth (reads normalized by bin size).
+
+- **Purpose:** Captures on-target sequencing depth.
+
     ]]></help>
     <expand macro="citations" />
 </tool>