# HG changeset patch
# User iuc
# Date 1591445383 0
# Node ID 3ba6fe6e7e8244e3a586dc8297b57ecf0af7b1bb
# Parent  f11619faed12742076c1ddc1dad89d00b588efb5
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/chira commit a69b18084d0a9ade4e29869f8b0e2ce5fc4e0b73"

diff -r f11619faed12 -r 3ba6fe6e7e82 chira_map.xml
--- a/chira_map.xml	Fri May 29 10:53:29 2020 +0000
+++ b/chira_map.xml	Sat Jun 06 12:09:43 2020 +0000
@@ -74,16 +74,16 @@
                 </param>
                 <param name="seed_length1" type="integer" value="12" label="Seed length 1" min="1"
                        help="Seed length for 1st mapping iteration. bwa-mem parameter -k"/>
-                <param name="seed_length2" type="integer" value="6" label="Seed length 2" min="1"
+                <param name="seed_length2" type="integer" value="16" label="Seed length 2" min="1"
                       help="Seed length for 2nd mapping iteration. bwa-mem parameter -k"/>
                 <param name="align_score1" type="integer" value="18" min="1"
                        label="Minimum alignmnet score for 1st mapping iteration" help="bwa-mem parameter '-T'"/>
-                <param name="align_score2" type="integer" value="10" min="1"
+                <param name="align_score2" type="integer" value="16" min="1"
                        label="Minimum alignmnet score for 2nd mapping iteration" help="bwa-mem parameter '-T'"/>
                 <param name="match1" type="integer" value="1" label="Matching score for 1st mapping iteration"/>
                 <param name="mismatch1" type="integer" value="4" label="Mismatch penalty for 1st mapping iteration"/>
                 <param name="match2" type="integer" value="1" label="Matching score for 2nd mapping iteration"/>
-                <param name="mismatch2" type="integer" value="7" label="Mismatch penalty for 2nd mapping iteration"/>
+                <param name="mismatch2" type="integer" value="6" label="Mismatch penalty for 2nd mapping iteration"/>
                 <param name="gapo1" type="integer" value="6" label="Gap opening penalty for 1st mapping iteration"/>
                 <param name="gape1" type="integer" value="1" label="Gap extension penalty for 1st mapping iteration"/>
                 <param name="gapo2" type="integer" value="100" label="Gap opening penalty for 2nd mapping iteration"/>
diff -r f11619faed12 -r 3ba6fe6e7e82 macros.xml
--- a/macros.xml	Fri May 29 10:53:29 2020 +0000
+++ b/macros.xml	Sat Jun 06 12:09:43 2020 +0000
@@ -1,6 +1,6 @@
 <macros>
     <token name="@WRAPPER_VERSION@">@TOOL_VERSION@+galaxy</token>
-    <token name="@TOOL_VERSION@">1.3.1</token>
+    <token name="@TOOL_VERSION@">1.3.3</token>
     <xml name="requirements">
         <requirements>
             <requirement type="package" version="@TOOL_VERSION@">chira</requirement>