view tetra.xml @ 0:10941a39b562 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/checkm commit 2a3b068a98bf0e913dc03e0d5c2182cfd102cf27

<tool id="checkm_tetra" name="CheckM tetra" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@">
    <description>
        Calculate tetranucleotide signature of sequences
    </description>
    <macros>
        <import>macros.xml</import>
    </macros>
    <expand macro="biotools"/>
    <expand macro="requirements"/>
    <expand macro="version"/>
    <command detect_errors="exit_code"><![CDATA[
checkm tetra
    '$seq_file'
    '$tetra_profile'
    --threads \${GALAXY_SLOTS:-1}
    ]]></command>
    <inputs>
        <param name="seq_file" type="data" format="fasta" label="Sequences used to generate bins"/>
    </inputs>
    <outputs>
        <data name="tetra_profile" format="tabular"/>
    </outputs>
    <tests>
        <test expect_num_outputs="1">
            <param name="seq_file" value="637000110.fna"/>
            <output name="tetra_profile" ftype="tabular">
                <assert_contents>
                    <has_text text="AC_000091"/>
                    <has_text text="Sequence Id"/>
                    <has_text text="GGGA"/>
                </assert_contents>
            </output>
        </test>
    </tests>
    <help><![CDATA[
@HELP_HEADER@

This command generates taxonomic-specific marker set

Inputs
======


Outputs
=======


    ]]></help>
    <expand macro="citations"/>
</tool>