Mercurial > repos > iuc > checkm_taxonomy_wf
view tool-data/genus.loc.sample @ 0:1da1bdfe434a draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/checkm commit 2a3b068a98bf0e913dc03e0d5c2182cfd102cf27
| author | iuc |
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| date | Fri, 29 Jul 2022 20:21:04 +0000 |
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# File generated by format_taxon_list.py script # taxon description Acetobacter Acetobacter (11 genomes, 1037 marker genes, 392 marker sets) Acholeplasma Acholeplasma (7 genomes, 309 marker genes, 151 marker sets) Achromobacter Achromobacter (5 genomes, 1298 marker genes, 427 marker sets) Acidaminococcus Acidaminococcus (5 genomes, 910 marker genes, 256 marker sets) Acidilobus Acidilobus (2 genomes, 645 marker genes, 144 marker sets) Acidiphilium Acidiphilium (3 genomes, 1244 marker genes, 339 marker sets) Acidithiobacillus Acidithiobacillus (5 genomes, 907 marker genes, 200 marker sets) Acidobacterium Acidobacterium (2 genomes, 1151 marker genes, 582 marker sets) Acidovorax Acidovorax (9 genomes, 931 marker genes, 335 marker sets) Aciduliprofundum Aciduliprofundum (2 genomes, 763 marker genes, 130 marker sets) Acinetobacter Acinetobacter (66 genomes, 883 marker genes, 281 marker sets) Actinobacillus Actinobacillus (18 genomes, 1004 marker genes, 589 marker sets) Actinobaculum Actinobaculum (5 genomes, 606 marker genes, 222 marker sets) Actinomadura Actinomadura (3 genomes, 940 marker genes, 376 marker sets) Actinomyces Actinomyces (27 genomes, 432 marker genes, 214 marker sets) Actinoplanes Actinoplanes (3 genomes, 1041 marker genes, 394 marker sets) Actinopolyspora Actinopolyspora (3 genomes, 872 marker genes, 433 marker sets) Aequorivita Aequorivita (2 genomes, 1087 marker genes, 283 marker sets) Aerococcus Aerococcus (2 genomes, 719 marker genes, 247 marker sets) Aeromonas Aeromonas (12 genomes, 1380 marker genes, 463 marker sets) Aggregatibacter Aggregatibacter (13 genomes, 991 marker genes, 357 marker sets) Agrobacterium Agrobacterium (12 genomes, 994 marker genes, 379 marker sets) Agromyces Agromyces (2 genomes, 1096 marker genes, 287 marker sets) Ahrensia Ahrensia (2 genomes, 1213 marker genes, 422 marker sets) Alcaligenes Alcaligenes (2 genomes, 1577 marker genes, 235 marker sets) Alcanivorax Alcanivorax (6 genomes, 1175 marker genes, 317 marker sets) Algoriphagus Algoriphagus (5 genomes, 947 marker genes, 361 marker sets) Aliagarivorans Aliagarivorans (2 genomes, 1740 marker genes, 251 marker sets) Alicycliphilus Alicycliphilus (2 genomes, 1650 marker genes, 258 marker sets) Alicyclobacillus Alicyclobacillus (8 genomes, 664 marker genes, 240 marker sets) Alishewanella Alishewanella (2 genomes, 1677 marker genes, 232 marker sets) Alistipes Alistipes (5 genomes, 703 marker genes, 335 marker sets) Alkaliphilus Alkaliphilus (2 genomes, 970 marker genes, 326 marker sets) Alloscardovia Alloscardovia (2 genomes, 950 marker genes, 116 marker sets) Alteromonas Alteromonas (6 genomes, 1419 marker genes, 314 marker sets) Aminobacterium Aminobacterium (2 genomes, 950 marker genes, 145 marker sets) Amycolatopsis Amycolatopsis (12 genomes, 644 marker genes, 302 marker sets) Anabaena Anabaena (5 genomes, 992 marker genes, 584 marker sets) Anaerococcus Anaerococcus (6 genomes, 665 marker genes, 181 marker sets) Anaeromyxobacter Anaeromyxobacter (4 genomes, 1162 marker genes, 375 marker sets) Anaplasma Anaplasma (2 genomes, 688 marker genes, 127 marker sets) Anoxybacillus Anoxybacillus (5 genomes, 1141 marker genes, 212 marker sets) Aquimarina Aquimarina (2 genomes, 1084 marker genes, 373 marker sets) Archaeoglobus Archaeoglobus (4 genomes, 662 marker genes, 415 marker sets) Arcobacter Arcobacter (8 genomes, 804 marker genes, 234 marker sets) Arenibacter Arenibacter (2 genomes, 1200 marker genes, 269 marker sets) Arsenophonus Arsenophonus (4 genomes, 640 marker genes, 164 marker sets) Arthrobacter Arthrobacter (25 genomes, 473 marker genes, 190 marker sets) Arthrospira Arthrospira (2 genomes, 1432 marker genes, 419 marker sets) Asticcacaulis Asticcacaulis (3 genomes, 1116 marker genes, 409 marker sets) Atopobium Atopobium (8 genomes, 486 marker genes, 194 marker sets) Aurantimonas Aurantimonas (2 genomes, 1288 marker genes, 356 marker sets) Azoarcus Azoarcus (2 genomes, 1311 marker genes, 376 marker sets) Azorhizobium Azorhizobium (2 genomes, 1547 marker genes, 390 marker sets) Azospira Azospira (2 genomes, 1578 marker genes, 218 marker sets) Azospirillum Azospirillum (3 genomes, 1038 marker genes, 549 marker sets) Azotobacter Azotobacter (3 genomes, 1930 marker genes, 269 marker sets) Bacillus Bacillus (122 genomes, 491 marker genes, 170 marker sets) Bacteroides Bacteroides (96 genomes, 524 marker genes, 282 marker sets) Bankia Bankia (2 genomes, 1388 marker genes, 332 marker sets) Barnesiella Barnesiella (2 genomes, 1045 marker genes, 230 marker sets) Bartonella Bartonella (29 genomes, 708 marker genes, 188 marker sets) Bdellovibrio Bdellovibrio (3 genomes, 843 marker genes, 296 marker sets) Bifidobacterium Bifidobacterium (57 genomes, 582 marker genes, 204 marker sets) Blastococcus Blastococcus (2 genomes, 1123 marker genes, 317 marker sets) Blattabacterium Blattabacterium (6 genomes, 547 marker genes, 16 marker sets) Blautia Blautia (7 genomes, 649 marker genes, 291 marker sets) Bordetella Bordetella (9 genomes, 892 marker genes, 277 marker sets) Borrelia Borrelia (17 genomes, 474 marker genes, 66 marker sets) Brachyspira Brachyspira (10 genomes, 783 marker genes, 458 marker sets) Bradyrhizobium Bradyrhizobium (36 genomes, 826 marker genes, 337 marker sets) Brevibacillus Brevibacillus (4 genomes, 1162 marker genes, 391 marker sets) Brevibacterium Brevibacterium (3 genomes, 833 marker genes, 259 marker sets) Brevundimonas Brevundimonas (6 genomes, 952 marker genes, 452 marker sets) Brucella Brucella (90 genomes, 1371 marker genes, 236 marker sets) Buchnera Buchnera (10 genomes, 380 marker genes, 35 marker sets) Burkholderia Burkholderia (66 genomes, 724 marker genes, 235 marker sets) Butyricimonas Butyricimonas (2 genomes, 1102 marker genes, 296 marker sets) Butyrivibrio Butyrivibrio (31 genomes, 578 marker genes, 245 marker sets) Caldicellulosiruptor Caldicellulosiruptor (11 genomes, 1010 marker genes, 169 marker sets) Calothrix Calothrix (2 genomes, 1244 marker genes, 726 marker sets) Campylobacter Campylobacter (55 genomes, 598 marker genes, 263 marker sets) Candidatus Arthromitus Candidatus Arthromitus (5 genomes, 889 marker genes, 153 marker sets) Candidatus Blochmannia Candidatus Blochmannia (3 genomes, 714 marker genes, 3 marker sets) Candidatus Liberibacter Candidatus Liberibacter (3 genomes, 764 marker genes, 141 marker sets) Candidatus Pelagibacter Candidatus Pelagibacter (12 genomes, 715 marker genes, 144 marker sets) Candidatus Pelagibacter-like Candidatus Pelagibacter-like (3 genomes, 911 marker genes, 76 marker sets) Candidatus Phytoplasma Candidatus Phytoplasma (4 genomes, 294 marker genes, 86 marker sets) Capnocytophaga Capnocytophaga (15 genomes, 728 marker genes, 514 marker sets) Carboxydothermus Carboxydothermus (2 genomes, 1295 marker genes, 139 marker sets) Cardiobacterium Cardiobacterium (2 genomes, 1153 marker genes, 474 marker sets) Caulobacter Caulobacter (4 genomes, 1219 marker genes, 375 marker sets) Cellulomonas Cellulomonas (6 genomes, 805 marker genes, 257 marker sets) Cellulophaga Cellulophaga (2 genomes, 1092 marker genes, 357 marker sets) Chitinilyticum Chitinilyticum (2 genomes, 1527 marker genes, 343 marker sets) Chlamydia Chlamydia (43 genomes, 609 marker genes, 88 marker sets) Chlamydophila Chlamydophila (16 genomes, 616 marker genes, 71 marker sets) Chlorobaculum Chlorobaculum (2 genomes, 1098 marker genes, 186 marker sets) Chlorobium Chlorobium (6 genomes, 820 marker genes, 277 marker sets) Chloroflexus Chloroflexus (5 genomes, 659 marker genes, 449 marker sets) Chroococcidiopsis Chroococcidiopsis (2 genomes, 1159 marker genes, 811 marker sets) Chryseobacterium Chryseobacterium (6 genomes, 812 marker genes, 414 marker sets) Citreicella Citreicella (2 genomes, 1369 marker genes, 390 marker sets) Citrobacter Citrobacter (8 genomes, 1566 marker genes, 347 marker sets) Citromicrobium Citromicrobium (2 genomes, 1356 marker genes, 186 marker sets) Clavibacter Clavibacter (2 genomes, 1152 marker genes, 228 marker sets) Clostridium Clostridium (180 genomes, 308 marker genes, 161 marker sets) Cohnella Cohnella (3 genomes, 1072 marker genes, 306 marker sets) Collinsella Collinsella (2 genomes, 829 marker genes, 315 marker sets) Colwellia Colwellia (3 genomes, 1371 marker genes, 293 marker sets) Comamonas Comamonas (5 genomes, 1047 marker genes, 399 marker sets) Commensalibacter Commensalibacter (2 genomes, 1241 marker genes, 137 marker sets) Conchiformibius Conchiformibius (2 genomes, 1237 marker genes, 317 marker sets) Coprobacillus Coprobacillus (3 genomes, 833 marker genes, 331 marker sets) Coprococcus Coprococcus (3 genomes, 780 marker genes, 260 marker sets) Coprothermobacter Coprothermobacter (2 genomes, 870 marker genes, 70 marker sets) Corynebacterium Corynebacterium (80 genomes, 585 marker genes, 243 marker sets) Coxiella Coxiella (5 genomes, 1047 marker genes, 146 marker sets) Cronobacter Cronobacter (4 genomes, 1838 marker genes, 338 marker sets) Cupriavidus Cupriavidus (8 genomes, 1163 marker genes, 352 marker sets) Curtobacterium Curtobacterium (2 genomes, 952 marker genes, 330 marker sets) Curvibacter Curvibacter (2 genomes, 1707 marker genes, 367 marker sets) Cyanobacterium Cyanobacterium (4 genomes, 650 marker genes, 477 marker sets) Cyanobium Cyanobium (2 genomes, 1225 marker genes, 277 marker sets) Cyanothece Cyanothece (8 genomes, 865 marker genes, 653 marker sets) Cycloclasticus Cycloclasticus (2 genomes, 1507 marker genes, 85 marker sets) Cytophaga Cytophaga (3 genomes, 745 marker genes, 464 marker sets) Dechloromonas Dechloromonas (4 genomes, 1203 marker genes, 276 marker sets) Dehalobacter Dehalobacter (3 genomes, 1160 marker genes, 157 marker sets) Dehalococcoides Dehalococcoides (5 genomes, 755 marker genes, 54 marker sets) Deinococcus Deinococcus (16 genomes, 630 marker genes, 426 marker sets) Delftia Delftia (3 genomes, 1683 marker genes, 409 marker sets) Desulfatibacillum Desulfatibacillum (2 genomes, 1377 marker genes, 388 marker sets) Desulfobacterium Desulfobacterium (3 genomes, 680 marker genes, 365 marker sets) Desulfobulbus Desulfobulbus (4 genomes, 863 marker genes, 276 marker sets) Desulfomicrobium Desulfomicrobium (2 genomes, 1255 marker genes, 271 marker sets) Desulfosporosinus Desulfosporosinus (4 genomes, 915 marker genes, 249 marker sets) Desulfotignum Desulfotignum (2 genomes, 1216 marker genes, 274 marker sets) Desulfotomaculum Desulfotomaculum (9 genomes, 640 marker genes, 214 marker sets) Desulfovibrio Desulfovibrio (31 genomes, 431 marker genes, 224 marker sets) Desulfurococcus Desulfurococcus (4 genomes, 599 marker genes, 129 marker sets) Dialister Dialister (4 genomes, 695 marker genes, 210 marker sets) Dickeya Dickeya (4 genomes, 1671 marker genes, 311 marker sets) Dictyoglomus Dictyoglomus (2 genomes, 1060 marker genes, 103 marker sets) Dorea Dorea (4 genomes, 835 marker genes, 261 marker sets) Dyadobacter Dyadobacter (4 genomes, 1056 marker genes, 319 marker sets) Dysgonomonas Dysgonomonas (3 genomes, 912 marker genes, 480 marker sets) Echinicola Echinicola (2 genomes, 1196 marker genes, 350 marker sets) Ectothiorhodospira Ectothiorhodospira (2 genomes, 1465 marker genes, 274 marker sets) Edwardsiella Edwardsiella (2 genomes, 1903 marker genes, 174 marker sets) Eggerthella Eggerthella (4 genomes, 843 marker genes, 301 marker sets) Ehrlichia Ehrlichia (6 genomes, 704 marker genes, 87 marker sets) Elizabethkingia Elizabethkingia (3 genomes, 1251 marker genes, 240 marker sets) Ensifer Ensifer (26 genomes, 1043 marker genes, 323 marker sets) Enterobacter Enterobacter (13 genomes, 1338 marker genes, 370 marker sets) Enterococcus Enterococcus (51 genomes, 672 marker genes, 259 marker sets) Enterovibrio Enterovibrio (2 genomes, 1819 marker genes, 389 marker sets) Entomoplasma Entomoplasma (3 genomes, 460 marker genes, 109 marker sets) Eremococcus Eremococcus (2 genomes, 922 marker genes, 109 marker sets) Erwinia Erwinia (8 genomes, 1420 marker genes, 280 marker sets) Erysipelothrix Erysipelothrix (2 genomes, 843 marker genes, 95 marker sets) Erythrobacter Erythrobacter (3 genomes, 1146 marker genes, 256 marker sets) Escherichia Escherichia (27 genomes, 1212 marker genes, 320 marker sets) Eubacterium Eubacterium (18 genomes, 234 marker genes, 157 marker sets) Exiguobacterium Exiguobacterium (11 genomes, 1039 marker genes, 263 marker sets) Facklamia Facklamia (5 genomes, 575 marker genes, 184 marker sets) Faecalibacterium Faecalibacterium (2 genomes, 1019 marker genes, 264 marker sets) Fangia Fangia (2 genomes, 1383 marker genes, 144 marker sets) Ferrimonas Ferrimonas (4 genomes, 1311 marker genes, 393 marker sets) Finegoldia Finegoldia (5 genomes, 878 marker genes, 111 marker sets) Fischerella Fischerella (4 genomes, 1081 marker genes, 585 marker sets) Flavobacterium Flavobacterium (20 genomes, 575 marker genes, 320 marker sets) Flexibacter Flexibacter (3 genomes, 877 marker genes, 663 marker sets) Francisella Francisella (40 genomes, 787 marker genes, 238 marker sets) Frankia Frankia (11 genomes, 597 marker genes, 285 marker sets) Fusobacterium Fusobacterium (21 genomes, 502 marker genes, 210 marker sets) Gallibacterium Gallibacterium (2 genomes, 1519 marker genes, 168 marker sets) Gardnerella Gardnerella (14 genomes, 621 marker genes, 237 marker sets) Gemella Gemella (5 genomes, 787 marker genes, 169 marker sets) Geobacillus Geobacillus (15 genomes, 823 marker genes, 228 marker sets) Geobacter Geobacter (10 genomes, 732 marker genes, 332 marker sets) Gillisia Gillisia (2 genomes, 1096 marker genes, 276 marker sets) Glaciecola Glaciecola (9 genomes, 1063 marker genes, 369 marker sets) Gloeocapsa Gloeocapsa (2 genomes, 1115 marker genes, 740 marker sets) Gluconacetobacter Gluconacetobacter (4 genomes, 1030 marker genes, 240 marker sets) Gluconobacter Gluconobacter (3 genomes, 1076 marker genes, 207 marker sets) Glycomyces Glycomyces (2 genomes, 1177 marker genes, 326 marker sets) Gordonia Gordonia (26 genomes, 670 marker genes, 298 marker sets) Gramella Gramella (3 genomes, 1089 marker genes, 213 marker sets) Granulicatella Granulicatella (2 genomes, 891 marker genes, 249 marker sets) Granulicella Granulicella (2 genomes, 1075 marker genes, 507 marker sets) Haemophilus Haemophilus (35 genomes, 829 marker genes, 480 marker sets) Hahella Hahella (2 genomes, 1567 marker genes, 475 marker sets) Halalkalicoccus Halalkalicoccus (2 genomes, 1003 marker genes, 212 marker sets) Halanaerobium Halanaerobium (2 genomes, 898 marker genes, 186 marker sets) Haliea Haliea (2 genomes, 1214 marker genes, 329 marker sets) Haloarcula Haloarcula (7 genomes, 842 marker genes, 250 marker sets) Halobacillus Halobacillus (3 genomes, 1266 marker genes, 292 marker sets) Halobacterium Halobacterium (3 genomes, 704 marker genes, 224 marker sets) Halobiforma Halobiforma (2 genomes, 1026 marker genes, 320 marker sets) Halococcus Halococcus (2 genomes, 767 marker genes, 347 marker sets) Haloferax Haloferax (10 genomes, 763 marker genes, 229 marker sets) Halomicrobium Halomicrobium (2 genomes, 970 marker genes, 233 marker sets) Halomonas Halomonas (11 genomes, 840 marker genes, 268 marker sets) Haloquadratum Haloquadratum (3 genomes, 798 marker genes, 192 marker sets) Halorubrum Halorubrum (4 genomes, 710 marker genes, 295 marker sets) Haloterrigena Haloterrigena (2 genomes, 826 marker genes, 332 marker sets) Helicobacter Helicobacter (33 genomes, 490 marker genes, 276 marker sets) Herbaspirillum Herbaspirillum (3 genomes, 1324 marker genes, 341 marker sets) Hippea Hippea (3 genomes, 979 marker genes, 157 marker sets) Hirschia Hirschia (2 genomes, 1333 marker genes, 222 marker sets) Histophilus Histophilus (2 genomes, 1341 marker genes, 98 marker sets) Hydrogenobacter Hydrogenobacter (2 genomes, 1116 marker genes, 52 marker sets) Hydrogenobaculum Hydrogenobaculum (5 genomes, 989 marker genes, 63 marker sets) Hymenobacter Hymenobacter (3 genomes, 998 marker genes, 370 marker sets) Hyphomicrobium Hyphomicrobium (7 genomes, 966 marker genes, 312 marker sets) Idiomarina Idiomarina (5 genomes, 1057 marker genes, 247 marker sets) Isoptericola Isoptericola (2 genomes, 1351 marker genes, 168 marker sets) Janibacter Janibacter (2 genomes, 1001 marker genes, 385 marker sets) Janthinobacterium Janthinobacterium (4 genomes, 1001 marker genes, 351 marker sets) Jeotgalicoccus Jeotgalicoccus (2 genomes, 1124 marker genes, 142 marker sets) Jonesia Jonesia (2 genomes, 1211 marker genes, 191 marker sets) Jonquetella Jonquetella (2 genomes, 987 marker genes, 78 marker sets) Kaistia Kaistia (2 genomes, 1516 marker genes, 278 marker sets) Kandleria Kandleria (3 genomes, 1026 marker genes, 154 marker sets) Kangiella Kangiella (2 genomes, 1480 marker genes, 165 marker sets) Kingella Kingella (3 genomes, 1040 marker genes, 614 marker sets) Klebsiella Klebsiella (29 genomes, 1359 marker genes, 348 marker sets) Labrenzia Labrenzia (2 genomes, 1431 marker genes, 424 marker sets) Lachnobacterium Lachnobacterium (2 genomes, 1164 marker genes, 173 marker sets) Lachnospira Lachnospira (3 genomes, 1045 marker genes, 196 marker sets) Lactobacillus Lactobacillus (135 genomes, 409 marker genes, 155 marker sets) Lactococcus Lactococcus (14 genomes, 683 marker genes, 238 marker sets) Laribacter Laribacter (2 genomes, 1579 marker genes, 150 marker sets) Leeuwenhoekiella Leeuwenhoekiella (2 genomes, 1172 marker genes, 263 marker sets) Legionella Legionella (18 genomes, 695 marker genes, 290 marker sets) Leifsonia Leifsonia (2 genomes, 888 marker genes, 212 marker sets) Leisingera Leisingera (3 genomes, 1200 marker genes, 365 marker sets) Leptolyngbya Leptolyngbya (3 genomes, 917 marker genes, 660 marker sets) Leptospira Leptospira (4 genomes, 1176 marker genes, 280 marker sets) Leptotrichia Leptotrichia (7 genomes, 750 marker genes, 335 marker sets) Leucobacter Leucobacter (2 genomes, 948 marker genes, 255 marker sets) Leuconostoc Leuconostoc (15 genomes, 611 marker genes, 181 marker sets) Lewinella Lewinella (2 genomes, 1073 marker genes, 736 marker sets) Listeria Listeria (24 genomes, 1137 marker genes, 165 marker sets) Loktanella Loktanella (5 genomes, 1000 marker genes, 308 marker sets) Luteimonas Luteimonas (2 genomes, 1277 marker genes, 311 marker sets) Lyngbya Lyngbya (2 genomes, 1111 marker genes, 753 marker sets) Lysinibacillus Lysinibacillus (3 genomes, 1381 marker genes, 323 marker sets) Lysobacter Lysobacter (2 genomes, 1235 marker genes, 265 marker sets) Magnetospirillum Magnetospirillum (3 genomes, 1103 marker genes, 429 marker sets) Mannheimia Mannheimia (4 genomes, 1320 marker genes, 245 marker sets) Maribacter Maribacter (3 genomes, 905 marker genes, 290 marker sets) Marinobacter Marinobacter (8 genomes, 993 marker genes, 273 marker sets) Marinobacterium Marinobacterium (3 genomes, 1157 marker genes, 339 marker sets) Marinomonas Marinomonas (4 genomes, 1256 marker genes, 320 marker sets) Mariprofundus Mariprofundus (2 genomes, 1329 marker genes, 184 marker sets) Maritimibacter Maritimibacter (2 genomes, 1288 marker genes, 421 marker sets) Massilia Massilia (3 genomes, 1363 marker genes, 402 marker sets) Megamonas Megamonas (3 genomes, 1113 marker genes, 288 marker sets) Megasphaera Megasphaera (7 genomes, 696 marker genes, 211 marker sets) Meiothermus Meiothermus (7 genomes, 852 marker genes, 456 marker sets) Mesoplasma Mesoplasma (5 genomes, 409 marker genes, 104 marker sets) Mesorhizobium Mesorhizobium (20 genomes, 767 marker genes, 381 marker sets) Metallosphaera Metallosphaera (3 genomes, 690 marker genes, 177 marker sets) Methanobacterium Methanobacterium (3 genomes, 797 marker genes, 214 marker sets) Methanobrevibacter Methanobrevibacter (5 genomes, 748 marker genes, 267 marker sets) Methanocaldococcus Methanocaldococcus (5 genomes, 799 marker genes, 537 marker sets) Methanocella Methanocella (3 genomes, 712 marker genes, 317 marker sets) Methanococcus Methanococcus (7 genomes, 710 marker genes, 377 marker sets) Methanocorpusculum Methanocorpusculum (2 genomes, 889 marker genes, 135 marker sets) Methanolobus Methanolobus (2 genomes, 944 marker genes, 240 marker sets) Methanoplanus Methanoplanus (2 genomes, 830 marker genes, 217 marker sets) Methanosaeta Methanosaeta (3 genomes, 700 marker genes, 354 marker sets) Methanosarcina Methanosarcina (3 genomes, 849 marker genes, 306 marker sets) Methanothermobacter Methanothermobacter (2 genomes, 965 marker genes, 76 marker sets) Methanothermococcus Methanothermococcus (2 genomes, 869 marker genes, 366 marker sets) Methanotorris Methanotorris (2 genomes, 891 marker genes, 279 marker sets) Methylobacter Methylobacter (2 genomes, 1294 marker genes, 436 marker sets) Methylobacterium Methylobacterium (16 genomes, 606 marker genes, 394 marker sets) Methylococcus Methylococcus (2 genomes, 1613 marker genes, 188 marker sets) Methylocystis Methylocystis (3 genomes, 1172 marker genes, 334 marker sets) Methylomicrobium Methylomicrobium (2 genomes, 1316 marker genes, 550 marker sets) Methylomonas Methylomonas (4 genomes, 1325 marker genes, 423 marker sets) Methylophaga Methylophaga (4 genomes, 1119 marker genes, 219 marker sets) Methylophilus Methylophilus (4 genomes, 1346 marker genes, 180 marker sets) Methylopila Methylopila (2 genomes, 1430 marker genes, 482 marker sets) Methylosarcina Methylosarcina (2 genomes, 1415 marker genes, 498 marker sets) Methylosinus Methylosinus (3 genomes, 1300 marker genes, 501 marker sets) Methylotenera Methylotenera (6 genomes, 1078 marker genes, 217 marker sets) Methyloversatilis Methyloversatilis (6 genomes, 1297 marker genes, 270 marker sets) Methylovorus Methylovorus (2 genomes, 1496 marker genes, 132 marker sets) Microbacterium Microbacterium (11 genomes, 623 marker genes, 280 marker sets) Microcoleus Microcoleus (2 genomes, 1191 marker genes, 754 marker sets) Micromonospora Micromonospora (5 genomes, 921 marker genes, 349 marker sets) Microvirga Microvirga (2 genomes, 1319 marker genes, 353 marker sets) Mobiluncus Mobiluncus (8 genomes, 830 marker genes, 222 marker sets) Moorella Moorella (2 genomes, 1125 marker genes, 231 marker sets) Moraxella Moraxella (10 genomes, 915 marker genes, 523 marker sets) Morganella Morganella (2 genomes, 1883 marker genes, 217 marker sets) Mycobacterium Mycobacterium (100 genomes, 693 marker genes, 300 marker sets) Mycoplasma Mycoplasma (83 genomes, 226 marker genes, 133 marker sets) Myroides Myroides (7 genomes, 948 marker genes, 335 marker sets) Natrialba Natrialba (3 genomes, 716 marker genes, 277 marker sets) Natrinema Natrinema (3 genomes, 796 marker genes, 297 marker sets) Natronobacterium Natronobacterium (2 genomes, 1012 marker genes, 271 marker sets) Natronorubrum Natronorubrum (2 genomes, 1039 marker genes, 332 marker sets) Neisseria Neisseria (47 genomes, 887 marker genes, 501 marker sets) Neorickettsia Neorickettsia (2 genomes, 678 marker genes, 16 marker sets) Nesterenkonia Nesterenkonia (2 genomes, 929 marker genes, 286 marker sets) Niabella Niabella (2 genomes, 1123 marker genes, 403 marker sets) Nisaea Nisaea (2 genomes, 1230 marker genes, 423 marker sets) Nitratireductor Nitratireductor (3 genomes, 1196 marker genes, 283 marker sets) Nitratiruptor Nitratiruptor (2 genomes, 1056 marker genes, 138 marker sets) Nitrobacter Nitrobacter (3 genomes, 1233 marker genes, 239 marker sets) Nitrosococcus Nitrosococcus (2 genomes, 1342 marker genes, 283 marker sets) Nitrosomonas Nitrosomonas (5 genomes, 957 marker genes, 324 marker sets) Nitrosospira Nitrosospira (2 genomes, 1303 marker genes, 242 marker sets) Nocardia Nocardia (6 genomes, 799 marker genes, 372 marker sets) Nocardioides Nocardioides (8 genomes, 683 marker genes, 299 marker sets) Nocardiopsis Nocardiopsis (4 genomes, 1007 marker genes, 327 marker sets) Nostoc Nostoc (5 genomes, 995 marker genes, 585 marker sets) Novosphingobium Novosphingobium (5 genomes, 907 marker genes, 296 marker sets) Oceanicaulis Oceanicaulis (2 genomes, 1398 marker genes, 175 marker sets) Oceanicola Oceanicola (4 genomes, 998 marker genes, 439 marker sets) Oceanimonas Oceanimonas (3 genomes, 1478 marker genes, 267 marker sets) Oceanobacillus Oceanobacillus (2 genomes, 1474 marker genes, 211 marker sets) Oceanospirillum Oceanospirillum (2 genomes, 1479 marker genes, 371 marker sets) Ochrobactrum Ochrobactrum (4 genomes, 1412 marker genes, 260 marker sets) Octadecabacter Octadecabacter (2 genomes, 1308 marker genes, 284 marker sets) Odoribacter Odoribacter (2 genomes, 1031 marker genes, 350 marker sets) Oenococcus Oenococcus (13 genomes, 679 marker genes, 136 marker sets) Oligella Oligella (2 genomes, 1242 marker genes, 186 marker sets) Oligotropha Oligotropha (2 genomes, 1592 marker genes, 192 marker sets) Olleya Olleya (2 genomes, 1165 marker genes, 249 marker sets) Olsenella Olsenella (2 genomes, 781 marker genes, 213 marker sets) Oribacterium Oribacterium (5 genomes, 555 marker genes, 211 marker sets) Orientia Orientia (2 genomes, 651 marker genes, 94 marker sets) Ornithobacterium Ornithobacterium (2 genomes, 1172 marker genes, 138 marker sets) Oscillatoria Oscillatoria (3 genomes, 1076 marker genes, 673 marker sets) Oxalobacter Oxalobacter (2 genomes, 1179 marker genes, 133 marker sets) Paenibacillus Paenibacillus (33 genomes, 473 marker genes, 180 marker sets) Pantoea Pantoea (10 genomes, 1403 marker genes, 316 marker sets) Parabacteroides Parabacteroides (6 genomes, 970 marker genes, 371 marker sets) Parachlamydia Parachlamydia (2 genomes, 1064 marker genes, 203 marker sets) Paracoccus Paracoccus (8 genomes, 917 marker genes, 340 marker sets) Paraprevotella Paraprevotella (2 genomes, 1113 marker genes, 229 marker sets) Parascardovia Parascardovia (2 genomes, 908 marker genes, 87 marker sets) Pasteurella Pasteurella (8 genomes, 1083 marker genes, 458 marker sets) Patulibacter Patulibacter (2 genomes, 1012 marker genes, 347 marker sets) Pectobacterium Pectobacterium (5 genomes, 1705 marker genes, 291 marker sets) Pediococcus Pediococcus (7 genomes, 664 marker genes, 140 marker sets) Pedobacter Pedobacter (5 genomes, 742 marker genes, 322 marker sets) Pelobacter Pelobacter (2 genomes, 958 marker genes, 487 marker sets) Pelodictyon Pelodictyon (2 genomes, 1031 marker genes, 227 marker sets) Pelosinus Pelosinus (3 genomes, 1539 marker genes, 333 marker sets) Peptoniphilus Peptoniphilus (7 genomes, 533 marker genes, 231 marker sets) Peptostreptococcus Peptostreptococcus (3 genomes, 839 marker genes, 240 marker sets) Persephonella Persephonella (3 genomes, 1036 marker genes, 256 marker sets) Phaeobacter Phaeobacter (8 genomes, 1087 marker genes, 310 marker sets) Photobacterium Photobacterium (6 genomes, 1105 marker genes, 326 marker sets) Photorhabdus Photorhabdus (3 genomes, 1648 marker genes, 281 marker sets) Planctomyces Planctomyces (3 genomes, 790 marker genes, 552 marker sets) Planktothrix Planktothrix (6 genomes, 1307 marker genes, 425 marker sets) Planococcus Planococcus (2 genomes, 1321 marker genes, 253 marker sets) Pleomorphomonas Pleomorphomonas (2 genomes, 1410 marker genes, 316 marker sets) Pleurocapsa Pleurocapsa (2 genomes, 1138 marker genes, 783 marker sets) Polaribacter Polaribacter (3 genomes, 942 marker genes, 301 marker sets) Polaromonas Polaromonas (4 genomes, 1001 marker genes, 336 marker sets) Polynucleobacter Polynucleobacter (3 genomes, 968 marker genes, 106 marker sets) Pontibacillus Pontibacillus (2 genomes, 1303 marker genes, 324 marker sets) Pontibacter Pontibacter (2 genomes, 1139 marker genes, 379 marker sets) Porphyromonas Porphyromonas (18 genomes, 569 marker genes, 346 marker sets) Prevotella Prevotella (65 genomes, 522 marker genes, 281 marker sets) Prochlorococcus Prochlorococcus (18 genomes, 806 marker genes, 240 marker sets) Promicromonospora Promicromonospora (2 genomes, 1247 marker genes, 525 marker sets) Propionibacterium Propionibacterium (35 genomes, 632 marker genes, 302 marker sets) Propionimicrobium Propionimicrobium (2 genomes, 1112 marker genes, 105 marker sets) Proteus Proteus (2 genomes, 1888 marker genes, 231 marker sets) Providencia Providencia (6 genomes, 1517 marker genes, 302 marker sets) Pseudanabaena Pseudanabaena (2 genomes, 1172 marker genes, 781 marker sets) Pseudoalteromonas Pseudoalteromonas (20 genomes, 847 marker genes, 396 marker sets) Pseudobutyrivibrio Pseudobutyrivibrio (5 genomes, 873 marker genes, 228 marker sets) Pseudoclavibacter Pseudoclavibacter (2 genomes, 863 marker genes, 298 marker sets) Pseudogulbenkiania Pseudogulbenkiania (3 genomes, 1447 marker genes, 267 marker sets) Pseudomonas Pseudomonas (182 genomes, 833 marker genes, 312 marker sets) Pseudonocardia Pseudonocardia (4 genomes, 796 marker genes, 343 marker sets) Pseudovibrio Pseudovibrio (2 genomes, 1687 marker genes, 338 marker sets) Pseudoxanthomonas Pseudoxanthomonas (5 genomes, 1159 marker genes, 369 marker sets) Psychrobacter Psychrobacter (6 genomes, 1010 marker genes, 372 marker sets) Psychroflexus Psychroflexus (2 genomes, 1118 marker genes, 211 marker sets) Psychromonas Psychromonas (5 genomes, 1062 marker genes, 326 marker sets) Pyrobaculum Pyrobaculum (6 genomes, 594 marker genes, 217 marker sets) Pyrococcus Pyrococcus (6 genomes, 654 marker genes, 266 marker sets) Rahnella Rahnella (2 genomes, 1981 marker genes, 296 marker sets) Ralstonia Ralstonia (14 genomes, 893 marker genes, 294 marker sets) Rheinheimera Rheinheimera (4 genomes, 1282 marker genes, 378 marker sets) Rhizobium Rhizobium (40 genomes, 863 marker genes, 345 marker sets) Rhodanobacter Rhodanobacter (3 genomes, 1566 marker genes, 246 marker sets) Rhodobacter Rhodobacter (8 genomes, 992 marker genes, 372 marker sets) Rhodococcus Rhodococcus (14 genomes, 715 marker genes, 302 marker sets) Rhodonellum Rhodonellum (2 genomes, 1473 marker genes, 372 marker sets) Rhodopirellula Rhodopirellula (3 genomes, 1048 marker genes, 661 marker sets) Rhodopseudomonas Rhodopseudomonas (7 genomes, 1180 marker genes, 388 marker sets) Rhodospirillum Rhodospirillum (3 genomes, 1208 marker genes, 514 marker sets) Rhodothermus Rhodothermus (3 genomes, 1379 marker genes, 216 marker sets) Rickettsia Rickettsia (43 genomes, 662 marker genes, 110 marker sets) Riemerella Riemerella (6 genomes, 888 marker genes, 396 marker sets) Roseburia Roseburia (2 genomes, 975 marker genes, 303 marker sets) Roseiflexus Roseiflexus (2 genomes, 1231 marker genes, 441 marker sets) Roseobacter Roseobacter (7 genomes, 850 marker genes, 348 marker sets) Roseomonas Roseomonas (2 genomes, 1576 marker genes, 318 marker sets) Roseovarius Roseovarius (3 genomes, 1134 marker genes, 423 marker sets) Rothia Rothia (6 genomes, 884 marker genes, 217 marker sets) Rubrivivax Rubrivivax (3 genomes, 1586 marker genes, 343 marker sets) Rubrobacter Rubrobacter (2 genomes, 991 marker genes, 269 marker sets) Ruegeria Ruegeria (7 genomes, 996 marker genes, 358 marker sets) Ruminococcus Ruminococcus (13 genomes, 436 marker genes, 242 marker sets) Runella Runella (3 genomes, 1097 marker genes, 525 marker sets) Saccharibacillus Saccharibacillus (2 genomes, 1247 marker genes, 331 marker sets) Saccharomonospora Saccharomonospora (8 genomes, 788 marker genes, 337 marker sets) Salinicoccus Salinicoccus (2 genomes, 1179 marker genes, 206 marker sets) Salinimicrobium Salinimicrobium (2 genomes, 1195 marker genes, 260 marker sets) Salinispora Salinispora (45 genomes, 1031 marker genes, 284 marker sets) Salmonella Salmonella (21 genomes, 1529 marker genes, 266 marker sets) Saprospira Saprospira (2 genomes, 1147 marker genes, 326 marker sets) Sediminibacterium Sediminibacterium (3 genomes, 992 marker genes, 328 marker sets) Selenomonas Selenomonas (21 genomes, 710 marker genes, 294 marker sets) Serratia Serratia (13 genomes, 985 marker genes, 293 marker sets) Shewanella Shewanella (26 genomes, 989 marker genes, 339 marker sets) Shigella Shigella (34 genomes, 1437 marker genes, 348 marker sets) Slackia Slackia (4 genomes, 616 marker genes, 193 marker sets) Solirubrobacter Solirubrobacter (2 genomes, 995 marker genes, 398 marker sets) Solobacterium Solobacterium (2 genomes, 877 marker genes, 170 marker sets) Sphaerochaeta Sphaerochaeta (3 genomes, 685 marker genes, 216 marker sets) Sphingobacterium Sphingobacterium (2 genomes, 996 marker genes, 521 marker sets) Sphingobium Sphingobium (3 genomes, 1179 marker genes, 403 marker sets) Sphingomonas Sphingomonas (11 genomes, 713 marker genes, 351 marker sets) Sphingopyxis Sphingopyxis (2 genomes, 1195 marker genes, 382 marker sets) Spirochaeta Spirochaeta (8 genomes, 487 marker genes, 211 marker sets) Spirosoma Spirosoma (4 genomes, 993 marker genes, 460 marker sets) Sporosarcina Sporosarcina (3 genomes, 999 marker genes, 269 marker sets) Staphylococcus Staphylococcus (60 genomes, 773 marker genes, 178 marker sets) Staphylothermus Staphylothermus (2 genomes, 676 marker genes, 104 marker sets) Stenotrophomonas Stenotrophomonas (10 genomes, 1276 marker genes, 380 marker sets) Streptococcus Streptococcus (226 genomes, 551 marker genes, 259 marker sets) Streptomyces Streptomyces (58 genomes, 506 marker genes, 264 marker sets) Sulfitobacter Sulfitobacter (4 genomes, 1140 marker genes, 294 marker sets) Sulfobacillus Sulfobacillus (3 genomes, 986 marker genes, 278 marker sets) Sulfolobus Sulfolobus (15 genomes, 621 marker genes, 152 marker sets) Sulfurihydrogenibium Sulfurihydrogenibium (3 genomes, 994 marker genes, 341 marker sets) Sulfurimonas Sulfurimonas (3 genomes, 853 marker genes, 245 marker sets) Sulfurospirillum Sulfurospirillum (3 genomes, 929 marker genes, 240 marker sets) Sutterella Sutterella (3 genomes, 935 marker genes, 232 marker sets) Synechococcus Synechococcus (25 genomes, 554 marker genes, 425 marker sets) Synechocystis Synechocystis (5 genomes, 1099 marker genes, 794 marker sets) Tannerella Tannerella (2 genomes, 822 marker genes, 441 marker sets) Taylorella Taylorella (4 genomes, 1069 marker genes, 71 marker sets) Tenacibaculum Tenacibaculum (2 genomes, 1057 marker genes, 272 marker sets) Teredinibacter Teredinibacter (10 genomes, 1162 marker genes, 360 marker sets) Tetragenococcus Tetragenococcus (2 genomes, 953 marker genes, 183 marker sets) Thalassospira Thalassospira (3 genomes, 1406 marker genes, 326 marker sets) Thauera Thauera (6 genomes, 1175 marker genes, 334 marker sets) Thermacetogenium Thermacetogenium (2 genomes, 1344 marker genes, 157 marker sets) Thermaerobacter Thermaerobacter (2 genomes, 1204 marker genes, 181 marker sets) Thermanaerovibrio Thermanaerovibrio (2 genomes, 1136 marker genes, 117 marker sets) Thermoanaerobacter Thermoanaerobacter (13 genomes, 976 marker genes, 195 marker sets) Thermoanaerobacterium Thermoanaerobacterium (4 genomes, 1117 marker genes, 147 marker sets) Thermobifida Thermobifida (2 genomes, 1421 marker genes, 225 marker sets) Thermococcus Thermococcus (9 genomes, 552 marker genes, 286 marker sets) Thermocrinis Thermocrinis (2 genomes, 941 marker genes, 515 marker sets) Thermocrispum Thermocrispum (2 genomes, 1264 marker genes, 288 marker sets) Thermodesulfatator Thermodesulfatator (2 genomes, 1149 marker genes, 333 marker sets) Thermodesulfobacterium Thermodesulfobacterium (3 genomes, 960 marker genes, 243 marker sets) Thermodesulfovibrio Thermodesulfovibrio (3 genomes, 999 marker genes, 215 marker sets) Thermogladius Thermogladius (2 genomes, 711 marker genes, 60 marker sets) Thermoplasma Thermoplasma (2 genomes, 733 marker genes, 167 marker sets) Thermoproteus Thermoproteus (3 genomes, 600 marker genes, 281 marker sets) Thermosipho Thermosipho (2 genomes, 1009 marker genes, 148 marker sets) Thermotoga Thermotoga (8 genomes, 768 marker genes, 325 marker sets) Thermus Thermus (14 genomes, 841 marker genes, 311 marker sets) Thioalkalimicrobium Thioalkalimicrobium (2 genomes, 1175 marker genes, 103 marker sets) Thioalkalivibrio Thioalkalivibrio (70 genomes, 1059 marker genes, 270 marker sets) Thiobacillus Thiobacillus (3 genomes, 1205 marker genes, 209 marker sets) Thiomicrospira Thiomicrospira (8 genomes, 954 marker genes, 243 marker sets) Thiomonas Thiomonas (3 genomes, 1202 marker genes, 366 marker sets) Thiothrix Thiothrix (4 genomes, 1003 marker genes, 417 marker sets) Tolumonas Tolumonas (2 genomes, 1431 marker genes, 200 marker sets) Treponema Treponema (28 genomes, 326 marker genes, 173 marker sets) Turicibacter Turicibacter (2 genomes, 1183 marker genes, 236 marker sets) Ureaplasma Ureaplasma (15 genomes, 372 marker genes, 51 marker sets) Variovorax Variovorax (7 genomes, 1114 marker genes, 351 marker sets) Veillonella Veillonella (13 genomes, 757 marker genes, 219 marker sets) Verrucomicrobium Verrucomicrobium (3 genomes, 697 marker genes, 466 marker sets) Vibrio Vibrio (70 genomes, 1084 marker genes, 381 marker sets) Vulcanisaeta Vulcanisaeta (2 genomes, 713 marker genes, 173 marker sets) Weissella Weissella (6 genomes, 534 marker genes, 171 marker sets) Wigglesworthia Wigglesworthia (2 genomes, 679 marker genes, 9 marker sets) Wohlfahrtiimonas Wohlfahrtiimonas (2 genomes, 1335 marker genes, 78 marker sets) Wolbachia Wolbachia (8 genomes, 427 marker genes, 275 marker sets) Xanthobacter Xanthobacter (3 genomes, 1394 marker genes, 374 marker sets) Xanthomonas Xanthomonas (16 genomes, 1163 marker genes, 401 marker sets) Xenorhabdus Xenorhabdus (2 genomes, 1608 marker genes, 267 marker sets) Xylella Xylella (10 genomes, 1207 marker genes, 178 marker sets) Yersinia Yersinia (35 genomes, 1383 marker genes, 341 marker sets) Zymomonas Zymomonas (3 genomes, 1142 marker genes, 133 marker sets)