Mercurial > repos > iuc > checkm_taxonomy_wf
view tool-data/class.loc.sample @ 0:1da1bdfe434a draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/checkm commit 2a3b068a98bf0e913dc03e0d5c2182cfd102cf27
| author | iuc |
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| date | Fri, 29 Jul 2022 20:21:04 +0000 |
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# File generated by format_taxon_list.py script # taxon description Acidobacteriia Acidobacteriia (10 genomes, 572 marker genes, 395 marker sets) Aciduliprofundum Aciduliprofundum (2 genomes, 763 marker genes, 130 marker sets) Actinobacteria Actinobacteria (729 genomes, 205 marker genes, 119 marker sets) Alphaproteobacteria Alphaproteobacteria (648 genomes, 225 marker genes, 148 marker sets) Aquificae Aquificae (18 genomes, 486 marker genes, 369 marker sets) Archaeoglobi Archaeoglobi (5 genomes, 619 marker genes, 392 marker sets) Bacilli Bacilli (821 genomes, 250 marker genes, 136 marker sets) Bacteroidetes Order II. Incertae sedis Bacteroidetes Order II. Incertae sedis (5 genomes, 801 marker genes, 466 marker sets) Bacteroidia Bacteroidia (211 genomes, 401 marker genes, 266 marker sets) Betaproteobacteria Betaproteobacteria (322 genomes, 387 marker genes, 234 marker sets) Chlamydiia Chlamydiia (64 genomes, 455 marker genes, 185 marker sets) Chlorobia Chlorobia (12 genomes, 612 marker genes, 333 marker sets) Chloroflexi Chloroflexi (9 genomes, 452 marker genes, 315 marker sets) Chroococcales Chroococcales (55 genomes, 490 marker genes, 378 marker sets) Clostridia Clostridia (446 genomes, 196 marker genes, 110 marker sets) Cytophagia Cytophagia (48 genomes, 438 marker genes, 328 marker sets) Deferribacteres Deferribacteres (6 genomes, 564 marker genes, 339 marker sets) Dehalococcoidetes Dehalococcoidetes (5 genomes, 755 marker genes, 54 marker sets) Deinococci Deinococci (40 genomes, 528 marker genes, 359 marker sets) Deltaproteobacteria Deltaproteobacteria (93 genomes, 197 marker genes, 125 marker sets) Dictyoglomia Dictyoglomia (2 genomes, 1060 marker genes, 103 marker sets) Epsilonproteobacteria Epsilonproteobacteria (111 genomes, 445 marker genes, 271 marker sets) Erysipelotrichi Erysipelotrichi (18 genomes, 301 marker genes, 159 marker sets) Flavobacteriia Flavobacteriia (126 genomes, 321 marker genes, 202 marker sets) Fusobacteriia Fusobacteriia (32 genomes, 289 marker genes, 159 marker sets) Gammaproteobacteria Gammaproteobacteria (1167 genomes, 280 marker genes, 178 marker sets) Halobacteria Halobacteria (59 genomes, 367 marker genes, 241 marker sets) Holophagae Holophagae (2 genomes, 883 marker genes, 459 marker sets) Ignavibacteria Ignavibacteria (2 genomes, 1003 marker genes, 383 marker sets) Methanobacteria Methanobacteria (12 genomes, 513 marker genes, 264 marker sets) Methanococci Methanococci (16 genomes, 610 marker genes, 439 marker sets) Methanomicrobia Methanomicrobia (29 genomes, 248 marker genes, 165 marker sets) Mollicutes Mollicutes (119 genomes, 177 marker genes, 105 marker sets) Negativicutes Negativicutes (64 genomes, 334 marker genes, 167 marker sets) Nitrosopumilales Nitrosopumilales (2 genomes, 714 marker genes, 109 marker sets) Nitrospira Nitrospira (4 genomes, 676 marker genes, 379 marker sets) Nostocales Nostocales (18 genomes, 732 marker genes, 508 marker sets) Opitutae Opitutae (4 genomes, 676 marker genes, 427 marker sets) Oscillatoriales Oscillatoriales (25 genomes, 545 marker genes, 415 marker sets) Planctomycetia Planctomycetia (11 genomes, 360 marker genes, 256 marker sets) Pleurocapsales Pleurocapsales (6 genomes, 840 marker genes, 624 marker sets) Prochlorales Prochlorales (18 genomes, 806 marker genes, 240 marker sets) Solirubrobacterales Solirubrobacterales (2 genomes, 995 marker genes, 398 marker sets) Sphingobacteriia Sphingobacteriia (27 genomes, 334 marker genes, 233 marker sets) Spirochaetia Spirochaetia (71 genomes, 218 marker genes, 127 marker sets) Stigonematales Stigonematales (5 genomes, 1007 marker genes, 576 marker sets) Synergistia Synergistia (13 genomes, 452 marker genes, 160 marker sets) Thermococci Thermococci (16 genomes, 500 marker genes, 315 marker sets) Thermodesulfobacteria Thermodesulfobacteria (5 genomes, 813 marker genes, 440 marker sets) Thermomicrobia Thermomicrobia (2 genomes, 933 marker genes, 336 marker sets) Thermoplasmata Thermoplasmata (4 genomes, 563 marker genes, 310 marker sets) Thermoprotei Thermoprotei (54 genomes, 217 marker genes, 168 marker sets) Thermotogae Thermotogae (14 genomes, 460 marker genes, 267 marker sets) Verrucomicrobiae Verrucomicrobiae (7 genomes, 403 marker genes, 284 marker sets) Zetaproteobacteria Zetaproteobacteria (2 genomes, 1329 marker genes, 184 marker sets)