view test-data/concatenated.tre @ 0:1da1bdfe434a draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/checkm commit 2a3b068a98bf0e913dc03e0d5c2182cfd102cf27

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otella_denticola|1.000:0.00793)UID2742||1.000:0.01277,(IMG_2513237391:0.01322,(IMG_645951836:0.00183,(IMG_2517572238:0.00193,IMG_2513237374:0.00456)UID2747||0.946:0.00241)UID2746|s__Prevotella_veroralis|1.000:0.01354)UID2745||0.363:0.00392)UID2741||0.937:0.00466)UID2738||1.000:0.02599,(IMG_647000292:0.01661,(IMG_648276713:0.00083,IMG_2518645615:0.00101)UID2749|s__Prevotella_amnii|1.000:0.04315)UID2748||1.000:0.03879)UID2737||0.766:0.00772)UID2731||0.992:0.01235)UID2730||1.000:0.03266,((((IMG_2531839272:0.00234,(IMG_647533195:0.00055,IMG_649989986:0.00055)UID2754|s__Prevotella_buccae|1.000:0.0029)UID2753||1.000:0.06489,(IMG_2526164515:0.06176,(IMG_2515154072:0.04637,(IMG_2513237263:0.04853,((IMG_2513237350:0.00227,IMG_2521172638:0.00209)UID2759|s__Prevotella_maculosa|1.000:0.03672,(IMG_649989989:0.02748,(IMG_2517572237:0.0009,(IMG_648861012:0.00335,IMG_645951806:0.00242)UID2762||0.333:0.00094)UID2761|s__Prevotella_oris|1.000:0.01512)UID2760||0.901:0.00792)UID2758||0.878:0.00757)UID2757||1.000:0.01422)UID2756||1.000:0.01944)UID2755||1.000:0.01882)UID2752||0.984:0.00992,((IMG_2524614710:0.059,IMG_2526164514:0.04427)UID2764||0.820:0.01417,IMG_2524614711:0.07775)UID2763||0.995:0.01669)UID2751||0.477:0.01012,(IMG_2503754046:0.09933,(IMG_645951825:0.0729,(IMG_2545555854:0.00066,(IMG_2509276066:0.00055,IMG_651324087:0.00055)UID2768|s__Prevotella_dentalis|0.971:0.00076)UID2767||1.000:0.04811)UID2766||0.979:0.01925)UID2765||1.000:0.02603)UID2750||0.942:0.01108)UID2729||1.000:0.02671)UID2725||0.952:0.01179,((IMG_2514885007:0.00433,IMG_647533197:0.0056)UID2770||1.000:0.08229,(IMG_648276716:0.07034,(IMG_647000294:0.00135,(IMG_647533198:0.01117,IMG_2518645604:0.00174)UID2773||0.998:0.00753)UID2772||1.000:0.05713)UID2771||0.972:0.01701)UID2769||0.947:0.01143)UID2724||0.993:0.01741,IMG_2513237318:0.07446)UID2723||0.884:0.01948,((IMG_2558860121:0.00155,IMG_2556921667:0.00072)UID2775|s__Prevotella_brevis|1.000:0.04167,((IMG_2558860126:0.00061,IMG_2561511222:0.0021)UID2777||1.000:0.01054,(IMG_2558860990:0.01272,(IMG_2558860122:0.00794,(IMG_646564560:0.00134,IMG_2562617035:0.00135)UID2780||0.886:0.00051)UID2779|s__Prevotella_ruminicola|0.999:0.00493)UID2778||0.331:0.00448)UID2776||1.000:0.04837)UID2774||1.000:0.05519)UID2722||0.484:0.01239,IMG_2509276029:0.06905)UID2721||1.000:0.06767)UID2719|g__Prevotella|0.998:0.02506)UID2718||0.997:0.0238,(IMG_2513237390:0.00456,IMG_651324083:0.00622)UID2781|g__Paraprevotella|1.000:0.0638)UID2717|f__Prevotellaceae|1.000:0.04694,(((IMG_2531839249:0.0239,(((((IMG_2510065017:0.00055,IMG_2503754051:0.00064)UID2789||0.986:0.00093,IMG_647000214:0.00055)UID2788||0.838:0.00055,(IMG_640753008:0.00055,(IMG_646206274:0.00055,IMG_649989913:0.00055)UID2791||0.890:0.00055)UID2790||0.752:0.00055)UID2787||0.758:0.00055,IMG_2510065018:0.00055)UID2786|s__Bacteroides_vulgatus|0.530:0.00081,((IMG_646206258:0.00055,IMG_646206263:0.00055)UID2793||0.755:0.00055,(IMG_642979370:0.00055,(IMG_2531839308:0.00055,(IMG_2531839307:0.00055,IMG_647533113:0.00055)UID2796||0.000:0.00055)UID2795||0.791:0.00055)UID2794||0.000:0.00055)UID2792|s__Bacteroides_dorei|0.989:0.00151)UID2785||1.000:0.01584)UID2784||1.000:0.01834,(IMG_649633013:0.03988,(IMG_2517572120:0.02876,(IMG_643886197:0.01769,(IMG_642979351:0.01229,IMG_642791613:0.01907)UID2800||0.708:0.00456)UID2799||0.997:0.00658)UID2798||0.770:0.00648)UID2797||1.000:0.01953)UID2783||0.894:0.01004,IMG_2541046973:0.12277)'UID2782|f__Bacteroidaceae;g__Bacteroides|0.948':0.01534)UID2716||1.000:0.02298)UID2659||0.360:0.01616)UID2657||1.000:0.05449)UID2654||0.681:0.01653)UID2621||1.000:0.02868)UID2619||1.000:0.08338,((IMG_2509601038:0.13548,IMG_2515154052:0.13288)UID2802||1.000:0.05762,(IMG_2556921657:0.17442,((IMG_2540341191:0.01887,IMG_2515154026:0.02415)UID2805|g__Butyricimonas|1.000:0.06319,(IMG_2513237280:0.06225,IMG_649633078:0.08273)UID2806|g__Odoribacter|0.996:0.03245)UID2804||1.000:0.13191)UID2803||0.154:0.02741)UID2801|f__Porphyromonadaceae|0.985:0.02729)UID2618||0.650:0.02544,(IMG_2509601020:0.12743,(IMG_2513237277:0.10019,(IMG_641736205:0.05043,(IMG_2517572213:0.01633,(IMG_2509601035:0.00055,IMG_2512047053:0.00055)UID2811||1.000:0.0158)UID2810||1.000:0.04235)UID2809||1.000:0.09695)UID2808|g__Alistipes|1.000:0.04735)UID2807|f__Rikenellaceae|1.000:0.11692)'UID2617|c__Bacteroidia;o__Bacteroidales|1.000':0.06397,((IMG_2503707007:0.16064,IMG_2556921666:0.16328)UID2813|f__Cryomorphaceae|1.000:0.09934,(IMG_2508501098:0.21548,(((((IMG_2522572176:0.04344,(IMG_2523231007:0.03051,(IMG_2513237331:0.00136,((IMG_2523231006:0.00055,IMG_2541046985:0.00055)UID2823||0.756:0.00055,(IMG_2522572177:0.00063,IMG_2522572175:0.00076)UID2824||0.736:0.00055)UID2822||0.945:0.00117)UID2821||1.000:0.02449)UID2820||1.000:0.01765)'UID2819|g__Myroides;s__Myroides_odoratimimus|1.000':0.05132,((IMG_2519103183:0.02847,IMG_2524614667:0.02424)UID2826||1.000:0.03992,((IMG_2511231122:0.05408,IMG_2524614632:0.03403)UID2828||1.000:0.02181,(IMG_2523533606:0.06063,((IMG_2523533607:0.06184,IMG_640612204:0.04145)UID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ospirillum|1.000:0.0843,(IMG_2519899638:0.13539,IMG_2519899571:0.11398)UID3789||0.998:0.03532)UID3786||1.000:0.04183)UID3782||0.921:0.0227,(IMG_2556921622:0.18401,(IMG_2534681947:0.01733,(IMG_2529292925:0.01994,IMG_2526164517:0.02323)UID3792||0.973:0.01297)UID3791|g__Thalassospira|1.000:0.16021)UID3790||1.000:0.05494)UID3781||1.000:0.0266,(((IMG_2531839096:0.15455,IMG_2546825534:0.16236)UID3795||0.999:0.03381,(((IMG_646564516:0.12899,IMG_2503113005:0.14294)UID3798||1.000:0.14784,(IMG_2524614677:0.14876,(IMG_641380442:0.083,(IMG_2523231049:0.02743,IMG_2522572171:0.21442)UID3801||1.000:0.06014)UID3800||1.000:0.06285)UID3799|g__Nisaea|0.699:0.02801)UID3797||1.000:0.0409,(IMG_2515154130:0.16914,(IMG_2523533601:0.16551,IMG_2516653055:0.23267)UID3803||1.000:0.03814)UID3802||1.000:0.04287)UID3796||0.537:0.01932)UID3794||0.820:0.01887,(IMG_2556921676:0.1987,(IMG_2523533609:0.15296,((IMG_2522572158:0.04914,IMG_2511231221:0.06268)UID3807||1.000:0.05911,(IMG_2524023250:0.08622,IMG_643348571:0.05593)UID3808||1.000:0.0744)UID3806|g__Azospirillum|1.000:0.03878)UID3805||0.997:0.03325)UID3804||0.206:0.01614)UID3793||1.000:0.01998)UID3780|f__Rhodospirillaceae|0.929:0.01715)UID3754|o__Rhodospirillales|0.997:0.02405)UID3753||0.974:0.0239)UID3305||1.000:0.09404,((IMG_650716015:0.46131,(((IMG_640427127:0.01006,IMG_642555145:0.00771)'UID3813|g__Orientia;s__Orientia_tsutsugamushi|1.000':0.41602,(IMG_637000242:0.04812,((IMG_2512564031:0.00182,IMG_640753045:0.00194)UID3816|s__Rickettsia_canadensis|1.000:0.03783,((IMG_637000244:0.01222,(IMG_2512564059:0.01058,IMG_640753043:0.02039)UID3819||1.000:0.00955)UID3818||0.998:0.00531,((IMG_2512564057:0.01939,((IMG_2512564054:0.00055,(IMG_637000245:0.00055,(IMG_2512564053:0.00055,IMG_2541047049:0.00055)UID3825||0.913:0.00055)UID3824||0.000:0.00055)UID3823||0.000:0.00055,(IMG_2541047975:0.00055,(IMG_2512564076:0.00055,IMG_2512564077:0.00055)UID3827||0.914:0.00055)UID3826||0.914:0.00055)UID3822|s__Rickettsia_prowazekii|1.000:0.01168)UID3821||1.000:0.04547,(((((IMG_650716082:0.00166,IMG_2511231062:0.00151)UID3832||1.000:0.00291,(((IMG_2512564061:0.00055,IMG_2511231061:0.00055)UID3835|s__Rickettsia_slovaca|1.000:0.00204,(IMG_637000243:0.0027,(IMG_638341178:0.00207,(IMG_644736402:0.00124,IMG_2512564062:0.00149)UID3838||0.000:0.00055)UID3837||0.965:0.00055)UID3836||0.943:0.0007)UID3834||0.961:0.00096,(IMG_644736403:0.00467,(IMG_2512564043:0.00107,(IMG_2512564047:0.00063,(IMG_2512564034:0.00055,(IMG_640753046:0.00055,(IMG_2512564049:0.00055,IMG_641522647:0.00055)UID3844||0.330:0.00055)UID3843||0.000:0.00055)UID3842||0.993:0.0014)UID3841|s__Rickettsia_rickettsii|0.980:0.00094)UID3840||1.000:0.00387)UID3839||0.942:0.00066)UID3833||1.000:0.00271)UID3831||0.997:0.00255,(IMG_2512564064:0.0033,(IMG_641228503:0.00225,IMG_2512564029:0.00165)UID3846|s__Rickettsia_massiliae|1.000:0.00242)UID3845||1.000:0.00435)UID3830||0.860:0.00055,(IMG_2512564067:0.00794,IMG_2512564072:0.01132)UID3847||0.788:0.00055)UID3829||1.000:0.00845,IMG_647533204:0.01026)UID3828||0.136:0.00088)UID3820||0.425:0.004)UID3817||0.998:0.00941)UID3815||1.000:0.03325)UID3814|g__Rickettsia|1.000:0.20334)UID3812|f__Rickettsiaceae|1.000:0.16359,((IMG_644736395:0.0207,IMG_637000191:0.02191)UID3849|g__Neorickettsia|1.000:0.69416,((((IMG_2513237285:0.01016,(IMG_642979308:0.00055,IMG_642555168:0.00055)UID3854|s__Wolbachia_endosymbiont_of_Culex_quinquefasciatus|1.000:0.00878)UID3853||1.000:0.05665,(IMG_637000339:0.00981,IMG_643692055:0.0051)UID3855||1.000:0.03179)UID3852||0.996:0.01679,(IMG_637000340:0.06057,IMG_2524023201:0.09694)UID3856||0.998:0.01775)UID3851|g__Wolbachia|1.000:0.24733,(((IMG_637000099:0.00397,IMG_639279308:0.00258)UID3859|s__Ehrlichia_ruminantium|1.000:0.08075,(IMG_637000097:0.04271,(IMG_2506210033:0.04636,IMG_637000098:0.03111)UID3861||0.934:0.01605)UID3860||1.000:0.03511)UID3858|g__Ehrlichia|1.000:0.13175,(IMG_637000009:0.17521,IMG_646311905:0.12948)UID3862|g__Anaplasma|1.000:0.16229)UID3857||1.000:0.14511)UID3850||1.000:0.15484)UID3848|f__Anaplasmataceae|1.000:0.14851)UID3811||0.995:0.08764)UID3810||1.000:0.13362,(IMG_2503982041:0.50799,((IMG_2503283019:0.15339,IMG_650716017:0.17559)UID3865||1.000:0.14392,(IMG_2265129005:0.22481,(((IMG_2513237133:0.00111,IMG_2511231042:0.00123)UID3869||0.983:0.00286,(IMG_638341056:0.00086,(IMG_2516143128:0.0017,IMG_637000058:0.00142)UID3871||0.210:0.00077)UID3870||1.000:0.00563)'UID3868|g__Candidatus_Pelagibacter;s__Candidatus_Pelagibacter_ubique|1.000':0.08045,(((IMG_2510461079:0.0205,IMG_2503754000:0.02325)UID3874|s__Candidatus_Pelagibacter-like_SAR11|1.000:0.0232,(IMG_2511231043:0.0202,(IMG_2511231041:0.01989,(IMG_2561511228:0.01065,(IMG_2561511239:0.00504,IMG_2503283017:0.00666)UID3878||0.708:0.002)UID3877||1.000:0.02483)UID3876||0.559:0.01192)UID3875||1.000:0.02758)UID3873||1.000:0.01557,(IMG_2503754001:0.04881,IMG_2521172709:0.05225)UID3879||1.000:0.02321)UID3872|g__Candidatus_Pelagibacter-like|1.000:0.03229)UID3867||1.000:0.1932)UID3866||1.000:0.10163)UID3864|f__Pelagibacteraceae|1.000: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