# HG changeset patch
# User iuc
# Date 1659988253 0
# Node ID d5c2aa105c2ecc5dfb0f96d85ce26bb73f90bfbb
# Parent  7ce554541b5c8549633157de2c53c10398fb202b
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/checkm commit a96defec82bfa9628fa821ffa6df5c68314a41d8

diff -r 7ce554541b5c -r d5c2aa105c2e analyze.xml
--- a/analyze.xml	Fri Jul 29 20:20:18 2022 +0000
+++ b/analyze.xml	Mon Aug 08 19:50:53 2022 +0000
@@ -36,7 +36,7 @@
         <data name="bin_stats_analyze" format="tabular" from_work_dir="output/storage/bin_stats.analyze.tsv" label="${tool.name} on ${on_string}: Marker gene bin stats" />
         <data name="checkm_hmm_info" format="zip" from_work_dir="output/storage/checkm_hmm_info.pkl.gz" label="${tool.name} on ${on_string}: Marker gene HMM info for each bin" />
         <collection name="hmmer_analyze_ali" type="list" label="${tool.name} on ${on_string}: HMMER alignment file for each bin">
-            <filter>ali and 'hmmer_analyze_ali' in extra_outputs</filter>
+            <filter>ali and extra_outputs and 'hmmer_analyze_ali' in extra_outputs</filter>
             <discover_datasets pattern="(?P&lt;designation&gt;.*)/hmmer\.analyze\.ali\.txt" format="txt" directory="output/bins/" recurse="true" match_relative_path="true"/>
         </collection>
     </outputs>
diff -r 7ce554541b5c -r d5c2aa105c2e macros.xml
--- a/macros.xml	Fri Jul 29 20:20:18 2022 +0000
+++ b/macros.xml	Mon Aug 08 19:50:53 2022 +0000
@@ -119,7 +119,7 @@
             <filter>'alignment_file' in extra_outputs</filter>
         </data>-->
         <data name="marker_gene_stats" format="tabular" from_work_dir="output/storage/marker_gene_stats.tsv"  label="${tool.name} on ${on_string}: Marker gene statistics">
-            <filter>'marker_gene_stats' in extra_outputs</filter>
+            <filter>extra_outputs and 'marker_gene_stats' in extra_outputs</filter>
         </data>
     </xml>
     <xml name="rank_taxon">