Mercurial > repos > iuc > cat_contigs
view test-data/cached_locally/CAT_prepare_test/taxonomy/names.dmp @ 0:2feaf3d2805b draft
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cat commit 863ad85836c80811d1d6b82eaf3ce903b273368a"
| author | iuc |
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| date | Tue, 10 Dec 2019 21:02:47 +0000 |
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1 | all | | synonym | 1 | root | | scientific name | 2 | Bacteria | Bacteria <prokaryotes> | scientific name | 2 | Monera | Monera <Bacteria> | in-part | 2 | Procaryotae | Procaryotae <Bacteria> | in-part | 2 | Prokaryota | Prokaryota <Bacteria> | in-part | 2 | Prokaryotae | Prokaryotae <Bacteria> | in-part | 2 | bacteria | bacteria <blast2> | blast name | 2 | eubacteria | | genbank common name | 2 | prokaryote | prokaryote <Bacteria> | in-part | 2 | prokaryotes | prokaryotes <Bacteria> | in-part | 641 | Vibrionaceae | | scientific name | 641 | Vibrionaceae Veron 1965 | | authority | 641 | gamma-3 proteobacteria | gamma-3 proteobacteria <#3> | in-part | 662 | "Microspira" Schroeter 1886 | | authority | 662 | "Pacinia" Trevisan 1885 | | authority | 662 | Beneckea | | synonym | 662 | Beneckea Campbell 1957 | | authority | 662 | Listonella | | synonym | 662 | Listonella MacDonell and Colwell 1986 | | authority | 662 | Microspira | | synonym | 662 | Pacinia | | synonym | 662 | Vibrio | | scientific name | 662 | Vibrio Pacini 1854 | | authority | 666 | "Bacillo virgola del Koch" Trevisan 1884 | | authority | 666 | "Bacillus cholerae" (Pacini 1854) Trevisan 1884 | | authority | 666 | "Bacillus cholerae-asiaticae" Trevisan 1884 | | authority | 666 | "Kommabacillus" Koch 1884 | | authority | 666 | "Liquidivibrio cholerae" (Pacini 1854) Orla-Jensen 1909 | | authority | 666 | "Microspira comma" Schroeter 1886 | | authority | 666 | "Pacinia cholerae-asiaticae" (Trevisan 1884) Trevisan 1885 | | authority | 666 | "Spirillum cholerae" (Pacini 1854) Mac1889 | | authority | 666 | "Spirillum cholerae-asiaticae" (Trevisan 1884) Zopf 1885 | | authority | 666 | "Vibrio cholera" (sic) Pacini 1854 | | authority | 666 | "Vibrio cholerae-asiaticae" (Trevisan 1884) Pfeiffer 1896 | | authority | 666 | "Vibrio comma" (Schroeter 1886) Blanchard 1906 | | authority | 666 | ATCC 14035 | ATCC 14035 <type strain> | type material | 666 | ATCC 14547 [[Vibrio albensis]] | ATCC 14547 [[Vibrio albensis]] <type strain> | type material | 666 | Bacillo virgola del Koch | | synonym | 666 | Bacillus cholerae | | synonym | 666 | Bacillus cholerae-asiaticae | | synonym | 666 | CCUG 48664 [[Vibrio albensis]] | CCUG 48664 [[Vibrio albensis]] <type strain> | type material | 666 | CCUG 9118 A | CCUG 9118 A <type strain> | type material | 666 | CECT 514 | CECT 514 <type strain> | type material | 666 | CIP 62.13 | CIP 62.13 <type strain> | type material | 666 | Kommabacillus | | synonym | 666 | LMG 4406 [[Vibrio albensis]] | LMG 4406 [[Vibrio albensis]] <type strain> | type material | 666 | LMG:4406 [[Vibrio albensis]] | LMG:4406 [[Vibrio albensis]] <type strain> | type material | 666 | Liquidivibrio cholerae | | synonym | 666 | Microspira comma | | synonym | 666 | NCIMB 41 [[Vibrio albensis]] | NCIMB 41 [[Vibrio albensis]] <type strain> | type material | 666 | NCTC 8021 | NCTC 8021 <type strain> | type material | 666 | Pacinia cholerae-asiaticae | | synonym | 666 | Spirillum cholerae | | synonym | 666 | Spirillum cholerae-asiaticae | | synonym | 666 | Vibrio albensis | | synonym | 666 | Vibrio albensis Lehmann and Neumann 1896 | | authority | 666 | Vibrio cholera | | synonym | 666 | Vibrio cholerae | | scientific name | 666 | Vibrio cholerae Pacini 1854 | | authority | 666 | Vibrio cholerae biovar albensis | | synonym | 666 | Vibrio cholerae bv. albensis | | synonym | 666 | Vibrio cholerae-asiaticae | | synonym | 666 | Vibrio comma | | synonym | 1224 | Alphaproteobacteraeota | | synonym | 1224 | Alphaproteobacteraeota Oren et al. 2015 | | authority | 1224 | Alphaproteobacteriota | | synonym | 1224 | Proteobacteria | | scientific name | 1224 | Proteobacteria Garrity et al. 2005 | | authority | 1224 | Proteobacteria [class] Stackebrandt et al. 1988 | | authority | 1224 | proteobacteria | proteobacteria <blast1224> | blast name | 1224 | purple bacteria | | common name | 1224 | purple bacteria and relatives | | common name | 1224 | purple non-sulfur bacteria | | common name | 1224 | purple photosynthetic bacteria | | common name | 1224 | purple photosynthetic bacteria and relatives | | common name | 1236 | Gammaproteobacteria | | scientific name | 1236 | Gammaproteobacteria Garrity et al. 2005 emend. Williams and Kelly 2013 | | authority | 1236 | Proteobacteria gamma subdivision | | synonym | 1236 | Purple bacteria, gamma subdivision | | synonym | 1236 | g-proteobacteria | | blast name | 1236 | gamma proteobacteria | | synonym | 1236 | gamma subdivision | | synonym | 1236 | gamma subgroup | | synonym | 1239 | Bacillaeota | | synonym | 1239 | Bacillaeota Oren et al. 2015 | | authority | 1239 | Bacillota | | synonym | 1239 | Bacillus/Clostridium group | | synonym | 1239 | Clostridium group firmicutes | | synonym | 1239 | Firmacutes | | synonym | 1239 | Firmicutes | | scientific name | 1239 | Firmicutes corrig. Gibbons and Murray 1978 | | authority | 1239 | Low G+C firmicutes | | synonym | 1239 | clostridial firmicutes | | synonym | 1239 | firmicutes | firmicutes <blast1239> | blast name | 1239 | low G+C Gram-positive bacteria | | common name | 1239 | low GC Gram+ | | common name | 1385 | Bacillales | | scientific name | 1385 | Bacillales Prevot 1953 | | authority | 1385 | Bacillus/Staphylococcus group | | synonym | 1637 | "Listerella" Pirie 1927 (nom. rej. Opin. 14) | | authority | 1637 | Listerella | | synonym | 1637 | Listeria | | scientific name | 1637 | Listeria Pirie 1940 | | authority | 1639 | "Bacterium monocytogenes hominis" Nyfeldt 1932 | | authority | 1639 | "Bacterium monocytogenes" Murray et al. 1926 | | authority | 1639 | "Corynebacterium infantisepticum" Potel 1950 | | authority | 1639 | "Corynebacterium parvulum" Schultz et al. 1934 | | authority | 1639 | "Erysipelothrix monocytogenes" (Murray et al. 1926) Wilson and Miles 1946 | | authority | 1639 | "Listerella hepatolytica" Pirie 1927 | | authority | 1639 | ATCC 15313 | ATCC 15313 <type strain> | type material | 1639 | Bacterium monocytogenes | | synonym | 1639 | Bacterium monocytogenes hominis | | synonym | 1639 | CCUG 15526 | CCUG 15526 <type strain> | type material | 1639 | CIP 82.110 | CIP 82.110 <type strain> | type material | 1639 | Corynebacterium infantisepticum | | synonym | 1639 | Corynebacterium parvulum | | synonym | 1639 | DSM 20600 | DSM 20600 <type strain> | type material | 1639 | Erysipelothrix monocytogenes | | synonym | 1639 | Listerella hepatolytica | | synonym | 1639 | Listeria monocytogenes | | scientific name | 1639 | Listeria monocytogenes (Murray et al. 1926) Pirie 1940 | | authority | 1639 | Listeria sp. FDA00013359 | | includes | 1639 | Listeria sp. FDA00013360 | | includes | 1639 | Listeria sp. FDA00013361 | | includes | 1639 | Listeria sp. FDA00013362 | | includes | 1639 | Listeria sp. FDA00013363 | | includes | 1639 | Listeria sp. FDA00013364 | | includes | 1639 | Listeria sp. FDA00013365 | | includes | 1639 | Listeria sp. FDA00013366 | | includes | 1639 | Listeria sp. FDA00013367 | | includes | 1639 | Listeria sp. FDA00013503 | | includes | 1639 | Listeria sp. FDA00013504 | | includes | 1639 | Listeria sp. FDA00013505 | | includes | 1639 | Listeria sp. FDA00013506 | | includes | 1639 | Listeria sp. FDA00013507 | | includes | 1639 | Listeria sp. FDA00013508 | | includes | 1639 | Listeria sp. FDA00013509 | | includes | 1639 | Listeria sp. FDA00013510 | | includes | 1639 | Listeria sp. FDA00013511 | | includes | 1639 | Listeria sp. FDA00013512 | | includes | 1639 | Listeria sp. FDA00013536 | | includes | 1639 | Listeria sp. FDA00013537 | | includes | 1639 | Listeria sp. FDA00013538 | | includes | 1639 | Listeria sp. FDA00013539 | | includes | 1639 | Listeria sp. FDA00013540 | | includes | 1639 | Listeria sp. FDA00013541 | | includes | 1639 | Listeria sp. FDA00013542 | | includes | 1639 | Listeria sp. FDA00013543 | | includes | 1639 | Listeria sp. FDA00013544 | | includes | 1639 | Listeria sp. FDA00013545 | | includes | 1639 | Listeria sp. FDA00013546 | | includes | 1639 | Listeria sp. FDA00013547 | | includes | 1639 | Listeria sp. FDA00013548 | | includes | 1639 | Listeria sp. FDA00013549 | | includes | 1639 | Listeria sp. FDA00013550 | | includes | 1639 | Listeria sp. FDA00013551 | | includes | 1639 | Listeria sp. FDA00013552 | | includes | 1639 | Listeria sp. FDA00013553 | | includes | 1639 | Listeria sp. FDA00013554 | | includes | 1639 | Listeria sp. FDA00013555 | | includes | 1639 | Listeria sp. FDA00013556 | | includes | 1639 | Listeria sp. FDA00013557 | | includes | 1639 | Listeria sp. FDA00013558 | | includes | 1639 | Listeria sp. FDA00013559 | | includes | 1639 | Listeria sp. FDA00013560 | | includes | 1639 | Listeria sp. FDA00013561 | | includes | 1639 | Listeria sp. FDA00013562 | | includes | 1639 | Listeria sp. FDA00013563 | | includes | 1639 | Listeria sp. FDA00013564 | | includes | 1639 | Listeria sp. FDA00013565 | | includes | 1639 | Listeria sp. FDA00013566 | | includes | 1639 | Listeria sp. FDA00013567 | | includes | 1639 | Listeria sp. FDA00013568 | | includes | 1639 | Listeria sp. FDA00013570 | | includes | 1639 | Listeria sp. FDA00013571 | | includes | 1639 | Listeria sp. FDA00013572 | | includes | 1639 | Listeria sp. FDA00013573 | | includes | 1639 | Listeria sp. FDA00013574 | | includes | 1639 | Listeria sp. FDA00013575 | | includes | 1639 | Listeria sp. FDA00013576 | | includes | 1639 | Listeria sp. FDA00013577 | | includes | 1639 | Listeria sp. FDA00013578 | | includes | 1639 | Listeria sp. FDA00013579 | | includes | 1639 | Listeria sp. FDA00013607 | | includes | 1639 | NCTC 10357 | NCTC 10357 <type strain> | type material | 1639 | SLCC 53 | SLCC 53 <type strain> | type material | 2157 | "Archaea" Woese et al. 1990 | | authority | 2157 | "Archaebacteria" (sic) Woese and Fox 1977 | | authority | 2157 | Archaea | | scientific name | 2157 | Archaebacteria | | synonym | 2157 | Mendosicutes | | synonym | 2157 | Metabacteria | | synonym | 2157 | Monera | Monera <Archaea> | in-part | 2157 | Procaryotae | Procaryotae <Archaea> | in-part | 2157 | Prokaryota | Prokaryota <Archaea> | in-part | 2157 | Prokaryotae | Prokaryotae <Archaea> | in-part | 2157 | archaea | archaea <blast2157> | blast name | 2157 | prokaryote | prokaryote <Archaea> | in-part | 2157 | prokaryotes | prokaryotes <Archaea> | in-part | 2158 | Methanobacteriales | | scientific name | 2158 | Methanobacteriales Balch and Wolfe 1981 | | authority | 2159 | Methanobacteriaceae | | scientific name | 2159 | Methanobacteriaceae Barker 1956 | | authority | 2172 | Methanobrevibacter | | scientific name | 2172 | Methanobrevibacter Balch and Wolfe 1981 | | authority | 28890 | "Euryarchaeota" Woese et al. 1990 | | authority | 28890 | Euryarchaeota | | scientific name | 28890 | Euryarchaeota Garrity and Holt 2002 | | authority | 28890 | Methanobacteraeota | | synonym | 28890 | Methanobacteraeota Oren et al. 2015 | | authority | 28890 | Methanobacteriota | | synonym | 28890 | euryarchaeotes | euryarchaeotes <blast28890> | blast name | 83816 | ATCC 35063 | ATCC 35063 <type strain> | type material | 83816 | DSM 1093 | DSM 1093 <type strain> | type material | 83816 | JCM 13430 | JCM 13430 <type strain> | type material | 83816 | Methanobacterium ruminantium | | synonym | 83816 | Methanobacterium ruminantium Smith and Hungate 1958 (Approved Lists 1980) | | authority | 83816 | Methanobrevibacter ruminantium | | scientific name | 83816 | Methanobrevibacter ruminantium (Smith and Hungate 1958) Balch and Wolfe 1981 | | authority | 83816 | OCM 146 | OCM 146 <type strain> | type material | 83816 | strain M1 | strain M1 <type strain> <taxid 83816> | type material | 91061 | Bacilli | | scientific name | 91061 | Bacilli Ludwig et al. 2010 | | authority | 91061 | Bacillus/Lactobacillus/Streptococcus group | | synonym | 91061 | Firmibacteria | | synonym | 91061 | Firmibacteria Murray 1988 | | authority | 131567 | biota | | synonym | 131567 | cellular organisms | | scientific name | 135623 | 'Vibrionales' | | synonym | 135623 | Vibrionaceae group | | synonym | 135623 | Vibrionales | | scientific name | 183925 | Archaeobacteria | | synonym | 183925 | Archaeobacteria Murray 1988 | | authority | 183925 | Methanobacteria | | scientific name | 183925 | Methanobacteria Boone 2002 | | authority | 183967 | Thermoplasmata | | scientific name | 183967 | Thermoplasmata Reysenbach 2002 | | authority | 186820 | Listeriaceae | | scientific name | 186820 | Listeriaceae Ludwig et al. 2010 | | authority | 1235850 | "Methanoplasmatales" Paul et al. 2012 | | authority | 1235850 | Methanomassiliicoccales | | scientific name | 1235850 | Methanomassiliicoccales Iino et al. 2013 | | authority | 1235850 | Methanoplasmatales | | synonym | 1783272 | Terrabacteria group | | scientific name | 2283794 | "Methanomada" Petitjean et al. 2015 | | authority | 2283794 | Methanogen Class I | | synonym | 2283794 | Methanomada | | equivalent name | 2283794 | Methanomada group | | scientific name | 2283796 | Diaforarchaea | | equivalent name | 2283796 | Diaforarchaea Petijean et al. 2015 | | authority | 2283796 | Diaforarchaea group | | scientific name |