Mercurial > repos > iuc > bioext_bam2msa

diff macros.xml @ 3:3afd5c92b4a1 draft

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"planemo upload for repository https://github.com/davebx/bioext-gx/ commit af3bfbbd3f1236bf96a25bcb8483f2889295ec0c"
author iuc
date Fri, 20 Aug 2021 21:01:51 +0000
parents 31e5a2d73131
children 7af12b491ec1
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--- a/macros.xml	Fri Jul 09 15:17:20 2021 +0000
+++ b/macros.xml	Fri Aug 20 21:01:51 2021 +0000
@@ -2,6 +2,7 @@
 <macros>
     <token name="@TOOL_VERSION@">0.20.1</token>
     <token name="@PROFILE@">20.05</token>
+    <token name="@SANITIZE@"><![CDATA[| gawk '{ if (\$0 ~ "^[^>]") {a = gensub(/[^ACGTURYKMSWBDHVNacgturykmswbdhvn?-]/, "", "g"); } else {a=gensub(/[^>A-Za-z0-9_]/, "_", "g"); }; print a } ' | sed 's,_\\+,_,g' >]]></token>
     <xml name="requirements">
         <requirements>
             <requirement type="package" version="@TOOL_VERSION@">python-bioext</requirement>