comparison binette.xml @ 1:6108dc80d9b2 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/binette/ commit 05daaa6ac68b46b29c23a9ad2dbc5be9107634a4

0:8faabc0f7f46

<tool id="binette" name="Binette" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@">
    <description>Binning refinement tool</description>
    <macros>
        <token name="@TOOL_VERSION@">1.0.5</token>
        <token name="@VERSION_SUFFIX@">0</token>
        <token name="@PROFILE@">24.1</token>
    </macros>
    <requirements>
        <requirement type="package" version="@TOOL_VERSION@">binette</requirement>
    </requirements>

            <when value="his">
                <param argument="--checkm2_db" type="data" format="dmnd" label="Input CheckM2 diamond database"
                help="When a CheckM2 diamond database should be used download and input it here."/>
            </when>
            <when value="cached">
                <param name="datamanager" type="select" label="Select reference genome" help="Checkm2 Diamond database">
                    <options from_data_table="checkm2">
                            <filter type="sort_by" column="2"/>
                    </options>
                    <validator type="no_options" message="No databases are available for this version of Checkm2. Please contact the Galaxy administrators to request one be installed."/>
                </param>

1:6108dc80d9b2

<tool id="binette" name="Binette" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@">
    <description>Binning refinement tool</description>
    <macros>
        <token name="@TOOL_VERSION@">1.0.5</token>
        <token name="@VERSION_SUFFIX@">1</token>
        <token name="@PROFILE@">24.1</token>
    </macros>
    <requirements>
        <requirement type="package" version="@TOOL_VERSION@">binette</requirement>
    </requirements>

            <when value="his">
                <param argument="--checkm2_db" type="data" format="dmnd" label="Input CheckM2 diamond database"
                help="When a CheckM2 diamond database should be used download and input it here."/>
            </when>
            <when value="cached">
                <param name="datamanager" type="select" label="Select Diamond DB" help="Checkm2 Diamond database">
                    <options from_data_table="checkm2">
                            <filter type="sort_by" column="2"/>
                    </options>
                    <validator type="no_options" message="No databases are available for this version of Checkm2. Please contact the Galaxy administrators to request one be installed."/>
                </param>