# HG changeset patch
# User iuc
# Date 1453925684 18000
# Node ID 3fe00810c5a21b0f4523a752fd5f8877e2770e36
# Parent  102424c60727b970e08a9b2734a0db7f8e8aefff
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools commit 6692e3a4fa1bf6e9a407735afdbb2454ed32b316

diff -r 102424c60727 -r 3fe00810c5a2 genomeCoverageBed.xml
--- a/genomeCoverageBed.xml	Mon Nov 09 18:41:22 2015 -0500
+++ b/genomeCoverageBed.xml	Wed Jan 27 15:14:44 2016 -0500
@@ -74,7 +74,7 @@
             label="Report the depth at each genome position with 1-based coordinates" help="(-d)" />
         <param name="dz" type="boolean" checked="False" truevalue="-dz" falsevalue=""
             label="Report the depth at each genome position with 0-based coordinatess" help="(-dz)" />
-        <param name="five" type="boolean" checked="False" truevalue="-d" falsevalue=""
+        <param name="five" type="boolean" checked="False" truevalue="-5" falsevalue=""
             label="Calculate coverage of 5’ positions" help="Instead of entire interval. (-5)" />
         <param name="three" type="boolean" checked="False" truevalue="-3" falsevalue=""
             label="Calculate coverage of 3’ positions" help="Instead of entire interval. (-3)" />
diff -r 102424c60727 -r 3fe00810c5a2 tool_dependencies.xml
--- a/tool_dependencies.xml	Mon Nov 09 18:41:22 2015 -0500
+++ b/tool_dependencies.xml	Wed Jan 27 15:14:44 2016 -0500
@@ -4,6 +4,6 @@
         <repository changeset_revision="e6f4a7398a47" name="package_bedtools_2_24" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
     </package>
     <package name="samtools" version="1.2">
-        <repository changeset_revision="192f00129358" name="package_samtools_1_2" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+        <repository changeset_revision="5b7172f9b230" name="package_samtools_1_2" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
     </package>
 </tool_dependency>